Enum: CdsPhaseType

For features of type CDS (coding sequence), the phase indicates where the feature begins with reference to the reading frame. The phase is one of the integers 0, 1, or 2, indicating the number of bases that should be removed from the beginning of this feature to reach the first base of the next codon.

URI: kb_cdm:CdsPhaseType

Permissible Values

Value	Meaning	Description
0	None	Zero bases from reading frame to feature start.
1	None	One base from reading frame to feature start.
2	None	Two bases from reading frame to feature start.

Slots

Name	Description
cds_phase	For features of type CDS, the phase indicates where the next codon begins relative to the 5' end (where the 5' end of the CDS is relative to the strand of the CDS feature) of the current CDS feature. cds_phase is required if the feature type is CDS.

Identifier and Mapping Information

Schema Source

• from schema: http://kbase.github.io/cdm-schema/cdm_schema

LinkML Source

name: CdsPhaseType
description: For features of type CDS (coding sequence), the phase indicates where
  the feature begins with reference to the reading frame. The phase is one of the
  integers 0, 1, or 2, indicating the number of bases that should be removed from
  the beginning of this feature to reach the first base of the next codon.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
permissible_values:
  '0':
    text: '0'
    description: Zero bases from reading frame to feature start.
  '1':
    text: '1'
    description: One base from reading frame to feature start.
  '2':
    text: '2'
    description: Two bases from reading frame to feature start.