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Class: ClusterXProtein

Relationship representing membership of a cluster. An optional score can be assigned to each cluster member.

URI: kb_cdm:ClusterXProtein

classDiagram class ClusterXProtein click ClusterXProtein href "../ClusterXProtein" ClusterXProtein : cluster_id ClusterXProtein : protein_id ClusterXProtein : score

Slots

Name Cardinality and Range Description Inheritance
cluster_id 1
UUID		 Internal (CDM) unique identifier direct
protein_id 1
UUID		 Internal (CDM) unique identifier for a protein within a cluster direct
score 0..1
Float		 Output from clustering protocol direct

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self kb_cdm:ClusterXProtein
native kb_cdm:ClusterXProtein

LinkML Source

Direct

name: Cluster_X_Protein
description: Relationship representing membership of a cluster. An optional score
  can be assigned to each cluster member.
from_schema: https://github.com/kbase/cdm-schema
attributes:
  cluster_id:
    name: cluster_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    domain_of:
    - Cluster
    - Cluster_X_Protein
    range: UUID
    required: true
  protein_id:
    name: protein_id
    description: Internal (CDM) unique identifier for a protein within a cluster.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Cluster_X_Protein
    - Feature_X_Protein
    - Protein
    range: UUID
    required: true
  score:
    name: score
    description: Output from clustering protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Cluster_X_Protein
    range: float

Induced

name: Cluster_X_Protein
description: Relationship representing membership of a cluster. An optional score
  can be assigned to each cluster member.
from_schema: https://github.com/kbase/cdm-schema
attributes:
  cluster_id:
    name: cluster_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    alias: cluster_id
    owner: Cluster_X_Protein
    domain_of:
    - Cluster
    - Cluster_X_Protein
    range: UUID
    required: true
  protein_id:
    name: protein_id
    description: Internal (CDM) unique identifier for a protein within a cluster.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: protein_id
    owner: Cluster_X_Protein
    domain_of:
    - Cluster_X_Protein
    - Feature_X_Protein
    - Protein
    range: UUID
    required: true
  score:
    name: score
    description: Output from clustering protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: score
    owner: Cluster_X_Protein
    domain_of:
    - Cluster_X_Protein
    range: float