Class: Contig

A contig (derived from the word "contiguous") is a set of DNA segments or sequences that overlap in a way that provides a contiguous representation of a genomic region. A contig should not contain any gaps.

URI: kb_cdm:Contig

classDiagram class Contig click Contig href "../Contig" Table <|-- Contig click Table href "../Table" Contig : contig_id Contig : gc_content Contig : hash Contig : length

Inheritance

Table
- Contig

Slots

Name	Cardinality and Range	Description	Inheritance
contig_id	1 UUID	Internal (CDM) unique identifier for a contig	direct
hash	0..1 String	A hash value generated from one or more object attributes that serves to ensu...	direct
gc_content	0..1 Float	GC content of the contig, expressed as a percentage	direct
length	0..1 Integer	Length of the contig in bp	direct

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:Contig
native	kb_cdm:Contig

LinkML Source

Direct

name: Contig
description: A contig (derived from the word "contiguous") is a set of DNA segments
  or sequences that overlap in a way that provides a contiguous representation of
  a genomic region. A contig should not contain any gaps.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slots:
- contig_id
- hash
slot_usage:
  contig_id:
    name: contig_id
    identifier: true
attributes:
  gc_content:
    name: gc_content
    description: GC content of the contig, expressed as a percentage.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    domain_of:
    - Contig
    range: float
  length:
    name: length
    description: Length of the contig in bp.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    domain_of:
    - Contig
    - Protein
    - Sequence
    range: integer

Induced

name: Contig
description: A contig (derived from the word "contiguous") is a set of DNA segments
  or sequences that overlap in a way that provides a contiguous representation of
  a genomic region. A contig should not contain any gaps.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slot_usage:
  contig_id:
    name: contig_id
    identifier: true
attributes:
  gc_content:
    name: gc_content
    description: GC content of the contig, expressed as a percentage.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    alias: gc_content
    owner: Contig
    domain_of:
    - Contig
    range: float
  length:
    name: length
    description: Length of the contig in bp.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    alias: length
    owner: Contig
    domain_of:
    - Contig
    - Protein
    - Sequence
    range: integer
  contig_id:
    name: contig_id
    description: Internal (CDM) unique identifier for a contig.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    identifier: true
    alias: contig_id
    owner: Contig
    domain_of:
    - Contig_X_ContigCollection
    - Contig_X_EncodedFeature
    - Contig_X_Feature
    - Contig_X_Protein
    - Contig
    range: UUID
    required: true
  hash:
    name: hash
    description: A hash value generated from one or more object attributes that serves
      to ensure the entity is unique.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    alias: hash
    owner: Contig
    domain_of:
    - Contig
    - ContigCollection
    - EncodedFeature
    - Feature
    - Protein
    range: string