Class: Contig
A contig (derived from the word "contiguous") is a set of DNA segments or sequences that overlap in a way that provides a contiguous representation of a genomic region. A contig should not contain any gaps.
URI: kb_cdm:Contig
classDiagram
class Contig
click Contig href "../Contig"
Table <|-- Contig
click Table href "../Table"
Contig : contig_id
Contig : gc_content
Contig : hash
Contig : length
Inheritance
- Table
- Contig
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
contig_id | 1 UUID |
Internal (CDM) unique identifier for a contig | direct |
hash | 0..1 String |
A hash value generated from one or more object attributes that serves to ensu... | direct |
gc_content | 0..1 Float |
GC content of the contig, expressed as a percentage | direct |
length | 0..1 Integer |
Length of the contig in bp | direct |
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/cdm_schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | kb_cdm:Contig |
native | kb_cdm:Contig |
LinkML Source
Direct
name: Contig
description: A contig (derived from the word "contiguous") is a set of DNA segments
or sequences that overlap in a way that provides a contiguous representation of
a genomic region. A contig should not contain any gaps.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slots:
- contig_id
- hash
slot_usage:
contig_id:
name: contig_id
identifier: true
attributes:
gc_content:
name: gc_content
description: GC content of the contig, expressed as a percentage.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
domain_of:
- Contig
range: float
length:
name: length
description: Length of the contig in bp.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
domain_of:
- Contig
- Protein
- Sequence
range: integer
Induced
name: Contig
description: A contig (derived from the word "contiguous") is a set of DNA segments
or sequences that overlap in a way that provides a contiguous representation of
a genomic region. A contig should not contain any gaps.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slot_usage:
contig_id:
name: contig_id
identifier: true
attributes:
gc_content:
name: gc_content
description: GC content of the contig, expressed as a percentage.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
alias: gc_content
owner: Contig
domain_of:
- Contig
range: float
length:
name: length
description: Length of the contig in bp.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
alias: length
owner: Contig
domain_of:
- Contig
- Protein
- Sequence
range: integer
contig_id:
name: contig_id
description: Internal (CDM) unique identifier for a contig.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
identifier: true
alias: contig_id
owner: Contig
domain_of:
- Contig_X_ContigCollection
- Contig_X_EncodedFeature
- Contig_X_Feature
- Contig_X_Protein
- Contig
range: UUID
required: true
hash:
name: hash
description: A hash value generated from one or more object attributes that serves
to ensure the entity is unique.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
alias: hash
owner: Contig
domain_of:
- Contig
- ContigCollection
- EncodedFeature
- Feature
- Protein
range: string