Class: ContigCollectionXProtein

Captures the relationship between a contig collection and a protein; equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512) contig collection.

URI: kb_cdm:ContigCollectionXProtein

classDiagram class ContigCollectionXProtein click ContigCollectionXProtein href "../ContigCollectionXProtein/" LinkerTable <|-- ContigCollectionXProtein click LinkerTable href "../LinkerTable/" ContigCollectionXProtein : contig_collection_id ContigCollectionXProtein : protein_id

Inheritance

Table
- LinkerTable
  - ContigCollectionXProtein

Slots

Name	Cardinality and Range	Description	Inheritance
contig_collection_id	1 CdmContigCollectionId	Internal (CDM) unique identifier for a contig collection. From the Entity table: entity_id where entity_type == 'ContigCollection'.	direct
protein_id	1..* CdmProteinId	Internal (CDM) unique identifier for a protein. From the Entity table: entity_id where entity_type == 'Protein'.	direct

Usages

used by	used in	type	used
Schema	contig_collection_x_proteins	range	ContigCollectionXProtein

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:ContigCollectionXProtein
native	kb_cdm:ContigCollectionXProtein

LinkML Source

Direct

name: ContigCollection_x_Protein
description: Captures the relationship between a contig collection and a protein;
  equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512)
  contig collection.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slots:
- contig_collection_id
- protein_id
slot_usage:
  protein_id:
    name: protein_id
    multivalued: true
represents_relationship: true

Induced

name: ContigCollection_x_Protein
description: Captures the relationship between a contig collection and a protein;
  equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512)
  contig collection.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slot_usage:
  protein_id:
    name: protein_id
    multivalued: true
attributes:
  contig_collection_id:
    name: contig_collection_id
    description: 'Internal (CDM) unique identifier for a contig collection.

      From the Entity table: entity_id where entity_type == ''ContigCollection''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_collection_id
    owner: ContigCollection_x_Protein
    domain_of:
    - ContigCollection
    - Contig_x_ContigCollection
    - ContigCollection_x_EncodedFeature
    - ContigCollection_x_Feature
    - ContigCollection_x_Protein
    range: cdm_contig_collection_id
    required: true
  protein_id:
    name: protein_id
    description: 'Internal (CDM) unique identifier for a protein.

      From the Entity table: entity_id where entity_type == ''Protein''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protein_id
    owner: ContigCollection_x_Protein
    domain_of:
    - Protein
    - Contig_x_Protein
    - ContigCollection_x_Protein
    - EncodedFeature_x_Protein
    - Feature_x_Protein
    range: cdm_protein_id
    required: true
    multivalued: true
represents_relationship: true