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Class: ContigXContigCollection

Captures the relationship between a contig and a contig collection; equivalent to contig part-of contig collection.

URI: kb_cdm:ContigXContigCollection

classDiagram class ContigXContigCollection click ContigXContigCollection href "../ContigXContigCollection/" LinkerTable <|-- ContigXContigCollection click LinkerTable href "../LinkerTable/" ContigXContigCollection : contig_collection_id ContigXContigCollection : contig_id

Inheritance

Slots

Name Cardinality and Range Description Inheritance
contig_id 1..*
CdmContigId		 Internal (CDM) unique identifier for a contig.
From the Entity table: entity_id where entity_type == 'Contig'.		 direct
contig_collection_id 1
CdmContigCollectionId
 Internal (CDM) unique identifier for a contig collection.
From the Entity table: entity_id where entity_type == 'ContigCollection'.		 direct

Usages

used by used in type used
Schema contig_x_contig_collections range ContigXContigCollection

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:ContigXContigCollection
native kb_cdm:ContigXContigCollection

LinkML Source

Direct

name: Contig_x_ContigCollection
description: Captures the relationship between a contig and a contig collection; equivalent
  to contig part-of contig collection.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slots:
- contig_id
- contig_collection_id
slot_usage:
  contig_id:
    name: contig_id
    multivalued: true
represents_relationship: true

Induced

name: Contig_x_ContigCollection
description: Captures the relationship between a contig and a contig collection; equivalent
  to contig part-of contig collection.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slot_usage:
  contig_id:
    name: contig_id
    multivalued: true
attributes:
  contig_id:
    name: contig_id
    description: 'Internal (CDM) unique identifier for a contig.

      From the Entity table: entity_id where entity_type == ''Contig''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_id
    owner: Contig_x_ContigCollection
    domain_of:
    - Contig
    - Contig_x_ContigCollection
    - Contig_x_EncodedFeature
    - Contig_x_Feature
    - Contig_x_Protein
    range: cdm_contig_id
    required: true
    multivalued: true
  contig_collection_id:
    name: contig_collection_id
    description: 'Internal (CDM) unique identifier for a contig collection.

      From the Entity table: entity_id where entity_type == ''ContigCollection''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_collection_id
    owner: Contig_x_ContigCollection
    domain_of:
    - ContigCollection
    - Contig_x_ContigCollection
    - ContigCollection_x_EncodedFeature
    - ContigCollection_x_Feature
    - ContigCollection_x_Protein
    range: cdm_contig_collection_id
    required: true
represents_relationship: true