Skip to content

Class: ContigXFeature

Captures the relationship between a contig and a feature; equivalent to feature part-of contig.

URI: kb_cdm:ContigXFeature

classDiagram class ContigXFeature click ContigXFeature href "../ContigXFeature/" LinkerTable <|-- ContigXFeature click LinkerTable href "../LinkerTable/" ContigXFeature : contig_id ContigXFeature : feature_id

Inheritance

Slots

Name Cardinality and Range Description Inheritance
contig_id 1
CdmContigId		 Internal (CDM) unique identifier for a contig.
From the Entity table: entity_id where entity_type == 'Contig'.		 direct
feature_id 1..*
CdmFeatureId
 Internal (CDM) unique identifier for a feature.
From the Entity table: entity_id where entity_type == 'Feature'.		 direct

Usages

used by used in type used
Schema contig_x_features range ContigXFeature

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:ContigXFeature
native kb_cdm:ContigXFeature

LinkML Source

Direct

name: Contig_x_Feature
description: Captures the relationship between a contig and a feature; equivalent
  to feature part-of contig.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slots:
- contig_id
- feature_id
slot_usage:
  feature_id:
    name: feature_id
    multivalued: true
represents_relationship: true

Induced

name: Contig_x_Feature
description: Captures the relationship between a contig and a feature; equivalent
  to feature part-of contig.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slot_usage:
  feature_id:
    name: feature_id
    multivalued: true
attributes:
  contig_id:
    name: contig_id
    description: 'Internal (CDM) unique identifier for a contig.

      From the Entity table: entity_id where entity_type == ''Contig''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_id
    owner: Contig_x_Feature
    domain_of:
    - Contig
    - Contig_x_ContigCollection
    - Contig_x_EncodedFeature
    - Contig_x_Feature
    - Contig_x_Protein
    range: cdm_contig_id
    required: true
  feature_id:
    name: feature_id
    description: 'Internal (CDM) unique identifier for a feature.

      From the Entity table: entity_id where entity_type == ''Feature''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: feature_id
    owner: Contig_x_Feature
    domain_of:
    - Feature
    - Contig_x_Feature
    - ContigCollection_x_Feature
    - EncodedFeature_x_Feature
    - Feature_x_Protein
    range: cdm_feature_id
    required: true
    multivalued: true
represents_relationship: true