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Class: ContigXProtein

Captures the relationship between a contig and a protein; equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512) contig.

URI: kb_cdm:ContigXProtein

classDiagram class ContigXProtein click ContigXProtein href "../ContigXProtein/" LinkerTable <|-- ContigXProtein click LinkerTable href "../LinkerTable/" ContigXProtein : contig_id ContigXProtein : protein_id

Inheritance

Slots

Name Cardinality and Range Description Inheritance
contig_id 1
CdmContigId		 Internal (CDM) unique identifier for a contig.
From the Entity table: entity_id where entity_type == 'Contig'.		 direct
protein_id 1..*
CdmProteinId
 Internal (CDM) unique identifier for a protein.
From the Entity table: entity_id where entity_type == 'Protein'.		 direct

Usages

used by used in type used
Schema contig_x_proteins range ContigXProtein

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:ContigXProtein
native kb_cdm:ContigXProtein

LinkML Source

Direct

name: Contig_x_Protein
description: Captures the relationship between a contig and a protein; equivalent
  to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512)
  contig.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slots:
- contig_id
- protein_id
slot_usage:
  protein_id:
    name: protein_id
    multivalued: true
represents_relationship: true

Induced

name: Contig_x_Protein
description: Captures the relationship between a contig and a protein; equivalent
  to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512)
  contig.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slot_usage:
  protein_id:
    name: protein_id
    multivalued: true
attributes:
  contig_id:
    name: contig_id
    description: 'Internal (CDM) unique identifier for a contig.

      From the Entity table: entity_id where entity_type == ''Contig''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_id
    owner: Contig_x_Protein
    domain_of:
    - Contig
    - Contig_x_ContigCollection
    - Contig_x_EncodedFeature
    - Contig_x_Feature
    - Contig_x_Protein
    range: cdm_contig_id
    required: true
  protein_id:
    name: protein_id
    description: 'Internal (CDM) unique identifier for a protein.

      From the Entity table: entity_id where entity_type == ''Protein''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protein_id
    owner: Contig_x_Protein
    domain_of:
    - Protein
    - Contig_x_Protein
    - ContigCollection_x_Protein
    - EncodedFeature_x_Protein
    - Feature_x_Protein
    range: cdm_protein_id
    required: true
    multivalued: true
represents_relationship: true