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Class: DataSourceNew

The source dataset from which data within the CDM was extracted. This might be an API query; a set of files downloaded from a website or uploaded by a user; a database dump; etc. A given data source should have either version information (e.g. a release number, like those used by UniProt or RefSeq) or an access date to allow the original raw data dump to be recapitulated.

__

URI: kb_cdm:DataSourceNew

classDiagram class DataSourceNew click DataSourceNew href "../DataSourceNew/" Table <|-- DataSourceNew click Table href "../Table/" DataSourceNew : comments DataSourceNew : data_source_id DataSourceNew : date_accessed DataSourceNew : date_published DataSourceNew : date_updated DataSourceNew : license DataSourceNew : name DataSourceNew : publisher DataSourceNew : resource_type DataSourceNew --> "1" ResourceType : resource_type click ResourceType href "../ResourceType/" DataSourceNew : url DataSourceNew : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
data_source_id 1
CdmDataSourceId		 Internal (CDM) unique identifier for a data source.
From the Entity table: entity_id where entity_type == 'DataSource'.		 direct
name 0..1
String
 The name of the data source. direct
comments 0..1
String		 Freeform text providing extra information. direct
date_accessed 1
Iso8601		 The date when the data was downloaded from the data source. direct
date_published 0..1
Iso8601		 The date when the data source was originally made public. direct
date_updated 0..1
Iso8601		 The date when the data source was last updated. direct
license 0..1
CdmLicenseId		 Usage license for the resource. Use one of the SPDX license identifiers or provide a link to the license text if no SPDX ID is available. direct
publisher 0..1
CdmContributorId		 The publisher of the resource. For a dataset, this is the repository where it is stored. direct
resource_type 1
ResourceType		 The broad type of the source data for this object. 'dataset' is currently the only valid value supported by this schema. direct
url 0..1
Uri		 The URL from which the data was loaded. direct
version 0..1
String		 The version of the resource. This must be an absolute version, not a relative version like 'latest'. direct

Usages

used by used in type used
Schema data_sources range DataSourceNew

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:DataSourceNew
native kb_cdm:DataSourceNew

LinkML Source

Direct

name: DataSourceNew
description: 'The source dataset from which data within the CDM was extracted. This
  might be an API query; a set of files downloaded from a website or uploaded by a
  user; a database dump; etc. A given data source should have either version information
  (e.g. a release number, like those used by UniProt or RefSeq) or an access date
  to allow the original raw data dump to be recapitulated.

  '
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: Table
slots:
- data_source_id
- name
slot_usage:
  data_source_id:
    name: data_source_id
    identifier: true
  name:
    name: name
    description: The name of the data source.
    examples:
    - value: UniProt
    - value: NMDC Runtime API
    - value: NCBI RefSeq
attributes:
  comments:
    name: comments
    description: Freeform text providing extra information.
    examples:
    - value: This comment adds a lot of extra value!
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    slot_uri: schema:comment
    domain_of:
    - Association
    - DataSourceNew
  date_accessed:
    name: date_accessed
    description: The date when the data was downloaded from the data source.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    rank: 1000
    domain_of:
    - DataSourceNew
    range: iso8601
    required: true
  date_published:
    name: date_published
    description: The date when the data source was originally made public.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    aliases:
    - date_created
    rank: 1000
    domain_of:
    - DataSourceNew
    range: iso8601
  date_updated:
    name: date_updated
    description: The date when the data source was last updated.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    rank: 1000
    domain_of:
    - DataSourceNew
    range: iso8601
  license:
    name: license
    description: 'Usage license for the resource. Use one of the SPDX license identifiers
      or provide a link to the license text if no SPDX ID is available.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    exact_mappings:
    - biolink:license
    related_mappings:
    - DataCite:attributes.rights_list
    rank: 1000
    slot_uri: schema:license
    domain_of:
    - DataSourceNew
    range: cdm_license_id
  publisher:
    name: publisher
    description: The publisher of the resource. For a dataset, this is the repository
      where it is stored.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    narrow_mappings:
    - ORCID:url
    - OSTI.ARTICLE:site_url
    rank: 1000
    slot_uri: schema:provider
    domain_of:
    - DataSourceNew
    range: cdm_contributor_id
  resource_type:
    name: resource_type
    description: The broad type of the source data for this object. 'dataset' is currently
      the only valid value supported by this schema.
    examples:
    - value: dataset
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    exact_mappings:
    - OSTI.ARTICLE:product_type
    - OSTI.ARTICLE:workType
    - DataCite:attributes.types.schema_org
    narrow_mappings:
    - OSTI.ARTICLE:dataset_type
    rank: 1000
    slot_uri: schema:@type
    domain_of:
    - DataSourceNew
    range: ResourceType
    required: true
  url:
    name: url
    description: The URL from which the data was loaded.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    rank: 1000
    domain_of:
    - DataSourceNew
    - License
    - Protocol
    range: uri
  version:
    name: version
    description: The version of the resource. This must be an absolute version, not
      a relative version like 'latest'.
    examples:
    - value: '5'
    - value: 1.2.1
    - value: '20220405'
    - value: v1.5.3
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    exact_mappings:
    - DataCite:attributes.version
    rank: 1000
    slot_uri: schema:version
    domain_of:
    - DataSourceNew
    - Protocol
any_of:
- slot_conditions:
    date_updated:
      name: date_updated
      required: true
- slot_conditions:
    version:
      name: version
      required: true

Induced

name: DataSourceNew
description: 'The source dataset from which data within the CDM was extracted. This
  might be an API query; a set of files downloaded from a website or uploaded by a
  user; a database dump; etc. A given data source should have either version information
  (e.g. a release number, like those used by UniProt or RefSeq) or an access date
  to allow the original raw data dump to be recapitulated.

  '
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: Table
slot_usage:
  data_source_id:
    name: data_source_id
    identifier: true
  name:
    name: name
    description: The name of the data source.
    examples:
    - value: UniProt
    - value: NMDC Runtime API
    - value: NCBI RefSeq
attributes:
  comments:
    name: comments
    description: Freeform text providing extra information.
    examples:
    - value: This comment adds a lot of extra value!
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    slot_uri: schema:comment
    alias: comments
    owner: DataSourceNew
    domain_of:
    - Association
    - DataSourceNew
    range: string
  date_accessed:
    name: date_accessed
    description: The date when the data was downloaded from the data source.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    rank: 1000
    alias: date_accessed
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    range: iso8601
    required: true
  date_published:
    name: date_published
    description: The date when the data source was originally made public.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    aliases:
    - date_created
    rank: 1000
    alias: date_published
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    range: iso8601
  date_updated:
    name: date_updated
    description: The date when the data source was last updated.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    rank: 1000
    alias: date_updated
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    range: iso8601
  license:
    name: license
    description: 'Usage license for the resource. Use one of the SPDX license identifiers
      or provide a link to the license text if no SPDX ID is available.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    exact_mappings:
    - biolink:license
    related_mappings:
    - DataCite:attributes.rights_list
    rank: 1000
    slot_uri: schema:license
    alias: license
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    range: cdm_license_id
  publisher:
    name: publisher
    description: The publisher of the resource. For a dataset, this is the repository
      where it is stored.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    narrow_mappings:
    - ORCID:url
    - OSTI.ARTICLE:site_url
    rank: 1000
    slot_uri: schema:provider
    alias: publisher
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    range: cdm_contributor_id
  resource_type:
    name: resource_type
    description: The broad type of the source data for this object. 'dataset' is currently
      the only valid value supported by this schema.
    examples:
    - value: dataset
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    exact_mappings:
    - OSTI.ARTICLE:product_type
    - OSTI.ARTICLE:workType
    - DataCite:attributes.types.schema_org
    narrow_mappings:
    - OSTI.ARTICLE:dataset_type
    rank: 1000
    slot_uri: schema:@type
    alias: resource_type
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    range: ResourceType
    required: true
  url:
    name: url
    description: The URL from which the data was loaded.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    rank: 1000
    alias: url
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    - License
    - Protocol
    range: uri
  version:
    name: version
    description: The version of the resource. This must be an absolute version, not
      a relative version like 'latest'.
    examples:
    - value: '5'
    - value: 1.2.1
    - value: '20220405'
    - value: v1.5.3
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_credit
    exact_mappings:
    - DataCite:attributes.version
    rank: 1000
    slot_uri: schema:version
    alias: version
    owner: DataSourceNew
    domain_of:
    - DataSourceNew
    - Protocol
    range: string
  data_source_id:
    name: data_source_id
    description: 'Internal (CDM) unique identifier for a data source.

      From the Entity table: entity_id where entity_type == ''DataSource''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    identifier: true
    alias: data_source_id
    owner: DataSourceNew
    domain_of:
    - Entity
    - Contributor_x_DataSource
    - DataSource
    - DataSourceNew
    - DataSource_x_Description
    - DataSource_x_FundingReference
    - DataSource_x_License
    - DataSource_x_Title
    range: cdm_data_source_id
    required: true
  name:
    name: name
    description: The name of the data source.
    examples:
    - value: UniProt
    - value: NMDC Runtime API
    - value: NCBI RefSeq
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: DataSourceNew
    domain_of:
    - Cluster
    - Event
    - Name
    - Contributor
    - DataSource
    - DataSourceNew
    - License
    - Experiment
    - Parameter
    - Protocol
    - ProtocolExecution
    - Variable
    range: string
any_of:
- slot_conditions:
    date_updated:
      name: date_updated
      required: true
- slot_conditions:
    version:
      name: version
      required: true