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Class: EncodedFeature

An entity generated from a feature, such as a transcript.

URI: cdm:EncodedFeature

classDiagram class EncodedFeature click EncodedFeature href "../EncodedFeature" HasNames <|-- EncodedFeature click HasNames href "../HasNames" HasIdentifiers <|-- EncodedFeature click HasIdentifiers href "../HasIdentifiers" EncodedFeature : encoded_feature_id EncodedFeature --> "1" Entity : encoded_feature_id click Entity href "../Entity" EncodedFeature : has_stop_codon EncodedFeature : identifiers EncodedFeature --> "*" Identifier : identifiers click Identifier href "../Identifier" EncodedFeature : names EncodedFeature --> "*" Name : names click Name href "../Name" EncodedFeature : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
encoded_feature_id 1
Entity		 Internal (CDM) unique identifier direct
has_stop_codon 0..1
Boolean		 Captures whether or not the sequence includes a stop coordinates direct
type 0..1
String		 The type of the entity direct
names *
Name		 Names, alternative names, and synonyms for an entity HasNames
identifiers *
Identifier		 URIs or CURIEs used to refer to this entity HasIdentifiers

Usages

used by used in type used
EncodedFeatureXFeature encoded_feature_id range EncodedFeature

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self cdm:EncodedFeature
native cdm:EncodedFeature

LinkML Source

Direct

name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: https://github.com/kbase/cdm-schema
mixins:
- HasNames
- HasIdentifiers
attributes:
  encoded_feature_id:
    name: encoded_feature_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    identifier: true
    domain_of:
    - EncodedFeature_X_Feature
    - EncodedFeature
    range: Entity
    required: true
  has_stop_codon:
    name: has_stop_codon
    description: Captures whether or not the sequence includes a stop coordinates.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - EncodedFeature
    range: boolean
  type:
    name: type
    description: The type of the entity. Should be a term from the sequence ontology.
    from_schema: https://github.com/kbase/cdm-schema
    domain_of:
    - EncodedFeature
    - Feature
    - Measurement
    - Sample
    - AttributeValue

Induced

name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: https://github.com/kbase/cdm-schema
mixins:
- HasNames
- HasIdentifiers
attributes:
  encoded_feature_id:
    name: encoded_feature_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    identifier: true
    alias: encoded_feature_id
    owner: EncodedFeature
    domain_of:
    - EncodedFeature_X_Feature
    - EncodedFeature
    range: Entity
    required: true
  has_stop_codon:
    name: has_stop_codon
    description: Captures whether or not the sequence includes a stop coordinates.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: has_stop_codon
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    range: boolean
  type:
    name: type
    description: The type of the entity. Should be a term from the sequence ontology.
    from_schema: https://github.com/kbase/cdm-schema
    alias: type
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    - Feature
    - Measurement
    - Sample
    - AttributeValue
    range: string
  names:
    name: names
    description: Names, alternative names, and synonyms for an entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: names
    owner: EncodedFeature
    domain_of:
    - HasNames
    range: Name
    multivalued: true
  identifiers:
    name: identifiers
    description: URIs or CURIEs used to refer to this entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: identifiers
    owner: EncodedFeature
    domain_of:
    - HasIdentifiers
    range: Identifier
    multivalued: true