Class: EncodedFeature
An entity generated from a feature, such as a transcript.
classDiagram
class EncodedFeature
click EncodedFeature href "../EncodedFeature"
Table <|-- EncodedFeature
click Table href "../Table"
EncodedFeature : encoded_feature_id
EncodedFeature : has_stop_codon
EncodedFeature : hash
EncodedFeature : type
Inheritance
- Table
- EncodedFeature
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
encoded_feature_id | 1 UUID |
Internal (CDM) unique identifier for an encoded feature | direct |
hash | 0..1 String |
A hash value generated from one or more object attributes that serves to ensu... | direct |
has_stop_codon | 0..1 Boolean |
Captures whether or not the sequence includes stop coordinates | direct |
type | 0..1 String |
The type of the entity | direct |
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/cdm_schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | kb_cdm:EncodedFeature |
native | kb_cdm:EncodedFeature |
LinkML Source
Direct
name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slots:
- encoded_feature_id
- hash
slot_usage:
encoded_feature_id:
name: encoded_feature_id
identifier: true
attributes:
has_stop_codon:
name: has_stop_codon
description: Captures whether or not the sequence includes stop coordinates.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
domain_of:
- EncodedFeature
range: boolean
type:
name: type
description: The type of the entity. Should be a term from the sequence ontology.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
domain_of:
- EncodedFeature
- Feature
- Sample
- Sequence
pattern: ^SO:\d+$
Induced
name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slot_usage:
encoded_feature_id:
name: encoded_feature_id
identifier: true
attributes:
has_stop_codon:
name: has_stop_codon
description: Captures whether or not the sequence includes stop coordinates.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
alias: has_stop_codon
owner: EncodedFeature
domain_of:
- EncodedFeature
range: boolean
type:
name: type
description: The type of the entity. Should be a term from the sequence ontology.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
alias: type
owner: EncodedFeature
domain_of:
- EncodedFeature
- Feature
- Sample
- Sequence
range: string
pattern: ^SO:\d+$
encoded_feature_id:
name: encoded_feature_id
description: Internal (CDM) unique identifier for an encoded feature.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
identifier: true
alias: encoded_feature_id
owner: EncodedFeature
domain_of:
- Contig_X_EncodedFeature
- ContigCollection_X_EncodedFeature
- EncodedFeature_X_Feature
- EncodedFeature
range: UUID
required: true
hash:
name: hash
description: A hash value generated from one or more object attributes that serves
to ensure the entity is unique.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
alias: hash
owner: EncodedFeature
domain_of:
- Contig
- ContigCollection
- EncodedFeature
- Feature
- Protein
range: string