Class: EncodedFeature

An entity generated from a feature, such as a transcript.

classDiagram class EncodedFeature click EncodedFeature href "../EncodedFeature" Table <|-- EncodedFeature click Table href "../Table" EncodedFeature : encoded_feature_id EncodedFeature : has_stop_codon EncodedFeature : hash EncodedFeature : type

Inheritance

Table
- EncodedFeature

Slots

Name	Cardinality and Range	Description	Inheritance
encoded_feature_id	1 UUID	Internal (CDM) unique identifier for an encoded feature	direct
hash	0..1 String	A hash value generated from one or more object attributes that serves to ensu...	direct
has_stop_codon	0..1 Boolean	Captures whether or not the sequence includes stop coordinates	direct
type	0..1 String	The type of the entity	direct

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:EncodedFeature
native	kb_cdm:EncodedFeature

LinkML Source

Direct

name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slots:
- encoded_feature_id
- hash
slot_usage:
  encoded_feature_id:
    name: encoded_feature_id
    identifier: true
attributes:
  has_stop_codon:
    name: has_stop_codon
    description: Captures whether or not the sequence includes stop coordinates.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    domain_of:
    - EncodedFeature
    range: boolean
  type:
    name: type
    description: The type of the entity. Should be a term from the sequence ontology.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    domain_of:
    - EncodedFeature
    - Feature
    - Sample
    - Sequence
    pattern: ^SO:\d+$

Induced

name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slot_usage:
  encoded_feature_id:
    name: encoded_feature_id
    identifier: true
attributes:
  has_stop_codon:
    name: has_stop_codon
    description: Captures whether or not the sequence includes stop coordinates.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    alias: has_stop_codon
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    range: boolean
  type:
    name: type
    description: The type of the entity. Should be a term from the sequence ontology.
    from_schema: http://kbase.github.io/cdm-schema/cdm_components
    rank: 1000
    alias: type
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    - Feature
    - Sample
    - Sequence
    range: string
    pattern: ^SO:\d+$
  encoded_feature_id:
    name: encoded_feature_id
    description: Internal (CDM) unique identifier for an encoded feature.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    identifier: true
    alias: encoded_feature_id
    owner: EncodedFeature
    domain_of:
    - Contig_X_EncodedFeature
    - ContigCollection_X_EncodedFeature
    - EncodedFeature_X_Feature
    - EncodedFeature
    range: UUID
    required: true
  hash:
    name: hash
    description: A hash value generated from one or more object attributes that serves
      to ensure the entity is unique.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    alias: hash
    owner: EncodedFeature
    domain_of:
    - Contig
    - ContigCollection
    - EncodedFeature
    - Feature
    - Protein
    range: string