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Class: EncodedFeature

An entity generated from a feature, such as a transcript.

URI: kb_cdm:EncodedFeature

classDiagram class EncodedFeature click EncodedFeature href "../EncodedFeature" UniqueNamedThing <|-- EncodedFeature click UniqueNamedThing href "../UniqueNamedThing" EncodedFeature : description EncodedFeature : encoded_feature_id EncodedFeature : has_stop_codon EncodedFeature : hash EncodedFeature : identifiers EncodedFeature --> "*" Identifier : identifiers click Identifier href "../Identifier" EncodedFeature : names EncodedFeature --> "*" Name : names click Name href "../Name" EncodedFeature : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
encoded_feature_id 1
UUID		 Internal (CDM) unique identifier direct
has_stop_codon 0..1
Boolean		 Captures whether or not the sequence includes a stop coordinates direct
type 0..1
String		 The type of the entity direct
hash 0..1
String		 A hash value generated from one or more object attributes that serves to ensu... UniqueNamedThing
identifiers *
Identifier		 URIs or CURIEs used to refer to this entity NamedThingWithId
description 0..1
String		 Definition or description of the entity NamedThing
names *
Name		 Names, alternative names, and synonyms for an entity NamedThing

Usages

used by used in type used
Feature encodes range EncodedFeature

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self kb_cdm:EncodedFeature
native kb_cdm:EncodedFeature

LinkML Source

Direct

name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: https://github.com/kbase/cdm-schema
is_a: UniqueNamedThing
attributes:
  encoded_feature_id:
    name: encoded_feature_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    identifier: true
    domain_of:
    - EncodedFeature
    range: UUID
    required: true
  has_stop_codon:
    name: has_stop_codon
    description: Captures whether or not the sequence includes a stop coordinates.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - EncodedFeature
    range: boolean
  type:
    name: type
    description: The type of the entity. Should be a term from the sequence ontology.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - EncodedFeature
    - Feature
    - Measurement
    - Sample

Induced

name: EncodedFeature
description: An entity generated from a feature, such as a transcript.
from_schema: https://github.com/kbase/cdm-schema
is_a: UniqueNamedThing
attributes:
  encoded_feature_id:
    name: encoded_feature_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    identifier: true
    alias: encoded_feature_id
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    range: UUID
    required: true
  has_stop_codon:
    name: has_stop_codon
    description: Captures whether or not the sequence includes a stop coordinates.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: has_stop_codon
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    range: boolean
  type:
    name: type
    description: The type of the entity. Should be a term from the sequence ontology.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: type
    owner: EncodedFeature
    domain_of:
    - EncodedFeature
    - Feature
    - Measurement
    - Sample
    range: string
  hash:
    name: hash
    description: A hash value generated from one or more object attributes that serves
      to ensure the entity is unique.
    from_schema: https://github.com/kbase/cdm-schema
    alias: hash
    owner: EncodedFeature
    domain_of:
    - UniqueNamedThing
    range: string
  identifiers:
    name: identifiers
    description: URIs or CURIEs used to refer to this entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: identifiers
    owner: EncodedFeature
    domain_of:
    - NamedThingWithId
    range: Identifier
    multivalued: true
  description:
    name: description
    description: Definition or description of the entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: description
    owner: EncodedFeature
    domain_of:
    - NamedThing
    - Event
    - Experiment
    - Identifier
    - Name
    - Project
    - Protein
    - Sample
    range: string
  names:
    name: names
    description: Names, alternative names, and synonyms for an entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: names
    owner: EncodedFeature
    domain_of:
    - NamedThing
    range: Name
    multivalued: true