Skip to content

Class: EncodedFeatureXProtein

Captures the relationship between an encoded feature (RNA of some sort) and a protein.

URI: kb_cdm:EncodedFeatureXProtein

classDiagram class EncodedFeatureXProtein click EncodedFeatureXProtein href "../EncodedFeatureXProtein/" LinkerTable <|-- EncodedFeatureXProtein click LinkerTable href "../LinkerTable/" EncodedFeatureXProtein : encoded_feature_id EncodedFeatureXProtein : protein_id

Inheritance

Slots

Name Cardinality and Range Description Inheritance
encoded_feature_id 1
CdmEncodedFeatureId		 Internal (CDM) unique identifier for an encoded feature.
From the Entity table: entity_id where entity_type == 'EncodedFeature'.		 direct
protein_id 1
CdmProteinId
 Internal (CDM) unique identifier for a protein.
From the Entity table: entity_id where entity_type == 'Protein'.		 direct

Usages

used by used in type used
Schema encoded_feature_x_proteins range EncodedFeatureXProtein

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:EncodedFeatureXProtein
native kb_cdm:EncodedFeatureXProtein

LinkML Source

Direct

name: EncodedFeature_x_Protein
description: Captures the relationship between an encoded feature (RNA of some sort)
  and a protein.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
slots:
- encoded_feature_id
- protein_id
represents_relationship: true

Induced

name: EncodedFeature_x_Protein
description: Captures the relationship between an encoded feature (RNA of some sort)
  and a protein.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: LinkerTable
attributes:
  encoded_feature_id:
    name: encoded_feature_id
    description: 'Internal (CDM) unique identifier for an encoded feature.

      From the Entity table: entity_id where entity_type == ''EncodedFeature''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: encoded_feature_id
    owner: EncodedFeature_x_Protein
    domain_of:
    - EncodedFeature
    - Contig_x_EncodedFeature
    - ContigCollection_x_EncodedFeature
    - EncodedFeature_x_Feature
    - EncodedFeature_x_Protein
    range: cdm_encoded_feature_id
    required: true
  protein_id:
    name: protein_id
    description: 'Internal (CDM) unique identifier for a protein.

      From the Entity table: entity_id where entity_type == ''Protein''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protein_id
    owner: EncodedFeature_x_Protein
    domain_of:
    - Protein
    - Contig_x_Protein
    - ContigCollection_x_Protein
    - EncodedFeature_x_Protein
    - Feature_x_Protein
    range: cdm_protein_id
    required: true
represents_relationship: true