Enum: EvidenceForExistence
The evidence for the existence of a biological entity. See https://www.uniprot.org/help/protein_existence, https://www.ncbi.nlm.nih.gov/genbank/evidence/,
URI: EvidenceForExistence
Permissible Values
Value | Meaning | Description |
---|---|---|
experimental_evidence_at_protein_level | None | Indicates that there is clear experimental evidence for the existence of the ... |
experimental_evidence_at_transcript_level | None | Indicates that the existence of a protein has not been strictly proven but th... |
protein_inferred_by_homology | None | Indicates that the existence of a protein is probable because clear orthologs... |
protein_predicted | None | Used for entries without evidence at protein, transcript, or homology levels |
protein_uncertain | None | Indicates that the existence of the protein is unsure |
Slots
Name | Description |
---|---|
evidence_for_existence | The evidence that this protein exists |
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
LinkML Source
name: EvidenceForExistence
description: The evidence for the existence of a biological entity. See https://www.uniprot.org/help/protein_existence,
https://www.ncbi.nlm.nih.gov/genbank/evidence/,
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
permissible_values:
experimental_evidence_at_protein_level:
text: experimental_evidence_at_protein_level
description: Indicates that there is clear experimental evidence for the existence
of the protein. The criteria include partial or complete Edman sequencing, clear
identification by mass spectrometry, X-ray or NMR structure, good quality protein-protein
interaction or detection of the protein by antibodies.
experimental_evidence_at_transcript_level:
text: experimental_evidence_at_transcript_level
description: Indicates that the existence of a protein has not been strictly proven
but that expression data (such as existence of cDNA(s), RT-PCR or Northern blots)
indicate the existence of a transcript.
protein_inferred_by_homology:
text: protein_inferred_by_homology
description: Indicates that the existence of a protein is probable because clear
orthologs exist in closely related species.
protein_predicted:
text: protein_predicted
description: Used for entries without evidence at protein, transcript, or homology
levels.
protein_uncertain:
text: protein_uncertain
description: Indicates that the existence of the protein is unsure.