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Class: GoldEnvironmentalContext

Environmental context, described using JGI's five level system.

URI: kb_cdm:GoldEnvironmentalContext

classDiagram class GoldEnvironmentalContext click GoldEnvironmentalContext href "../GoldEnvironmentalContext" EnvironmentalContext <|-- GoldEnvironmentalContext click EnvironmentalContext href "../EnvironmentalContext" GoldEnvironmentalContext : description GoldEnvironmentalContext : ecosystem GoldEnvironmentalContext : ecosystem_category GoldEnvironmentalContext : ecosystem_subtype GoldEnvironmentalContext : ecosystem_type GoldEnvironmentalContext : gold_environmental_context_id GoldEnvironmentalContext : hash GoldEnvironmentalContext : identifiers GoldEnvironmentalContext --> "*" Identifier : identifiers click Identifier href "../Identifier" GoldEnvironmentalContext : names GoldEnvironmentalContext --> "*" Name : names click Name href "../Name" GoldEnvironmentalContext : specific_ecosystem

Inheritance

Slots

Name Cardinality and Range Description Inheritance
gold_environmental_context_id 1
UUID		 Internal (CDM) unique identifier direct
ecosystem 0..1
String		 JGI GOLD descriptor representing the top level ecosystem categorization direct
ecosystem_category 0..1
String		 JGI GOLD descriptor representing the ecosystem category direct
ecosystem_subtype 0..1
String		 JGI GOLD descriptor representing the subtype of ecosystem direct
ecosystem_type 0..1
String		 JGI GOLD descriptor representing the ecosystem type direct
specific_ecosystem 0..1
String		 JGI GOLD descriptor representing the most specific level of ecosystem categor... direct
hash 0..1
String		 A hash value generated from one or more object attributes that serves to ensu... UniqueNamedThing
identifiers *
Identifier		 URIs or CURIEs used to refer to this entity NamedThingWithId
description 0..1
String		 Definition or description of the entity NamedThing
names *
Name		 Names, alternative names, and synonyms for an entity NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self kb_cdm:GoldEnvironmentalContext
native kb_cdm:GoldEnvironmentalContext

LinkML Source

Direct

name: GoldEnvironmentalContext
description: Environmental context, described using JGI's five level system.
from_schema: https://github.com/kbase/cdm-schema
is_a: EnvironmentalContext
attributes:
  gold_environmental_context_id:
    name: gold_environmental_context_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    identifier: true
    domain_of:
    - GoldEnvironmentalContext
    range: UUID
    required: true
  ecosystem:
    name: ecosystem
    description: JGI GOLD descriptor representing the top level ecosystem categorization.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - GoldEnvironmentalContext
  ecosystem_category:
    name: ecosystem_category
    description: JGI GOLD descriptor representing the ecosystem category.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - GoldEnvironmentalContext
  ecosystem_subtype:
    name: ecosystem_subtype
    description: JGI GOLD descriptor representing the subtype of ecosystem. May be
      "Unclassified".
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - GoldEnvironmentalContext
  ecosystem_type:
    name: ecosystem_type
    description: JGI GOLD descriptor representing the ecosystem type. May be "Unclassified".
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - GoldEnvironmentalContext
  specific_ecosystem:
    name: specific_ecosystem
    description: JGI GOLD descriptor representing the most specific level of ecosystem
      categorization. May be "Unclassified".
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - GoldEnvironmentalContext

Induced

name: GoldEnvironmentalContext
description: Environmental context, described using JGI's five level system.
from_schema: https://github.com/kbase/cdm-schema
is_a: EnvironmentalContext
attributes:
  gold_environmental_context_id:
    name: gold_environmental_context_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    identifier: true
    alias: gold_environmental_context_id
    owner: GoldEnvironmentalContext
    domain_of:
    - GoldEnvironmentalContext
    range: UUID
    required: true
  ecosystem:
    name: ecosystem
    description: JGI GOLD descriptor representing the top level ecosystem categorization.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: ecosystem
    owner: GoldEnvironmentalContext
    domain_of:
    - GoldEnvironmentalContext
    range: string
  ecosystem_category:
    name: ecosystem_category
    description: JGI GOLD descriptor representing the ecosystem category.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: ecosystem_category
    owner: GoldEnvironmentalContext
    domain_of:
    - GoldEnvironmentalContext
    range: string
  ecosystem_subtype:
    name: ecosystem_subtype
    description: JGI GOLD descriptor representing the subtype of ecosystem. May be
      "Unclassified".
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: ecosystem_subtype
    owner: GoldEnvironmentalContext
    domain_of:
    - GoldEnvironmentalContext
    range: string
  ecosystem_type:
    name: ecosystem_type
    description: JGI GOLD descriptor representing the ecosystem type. May be "Unclassified".
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: ecosystem_type
    owner: GoldEnvironmentalContext
    domain_of:
    - GoldEnvironmentalContext
    range: string
  specific_ecosystem:
    name: specific_ecosystem
    description: JGI GOLD descriptor representing the most specific level of ecosystem
      categorization. May be "Unclassified".
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: specific_ecosystem
    owner: GoldEnvironmentalContext
    domain_of:
    - GoldEnvironmentalContext
    range: string
  hash:
    name: hash
    description: A hash value generated from one or more object attributes that serves
      to ensure the entity is unique.
    from_schema: https://github.com/kbase/cdm-schema
    alias: hash
    owner: GoldEnvironmentalContext
    domain_of:
    - UniqueNamedThing
    range: string
  identifiers:
    name: identifiers
    description: URIs or CURIEs used to refer to this entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: identifiers
    owner: GoldEnvironmentalContext
    domain_of:
    - NamedThingWithId
    range: Identifier
    multivalued: true
  description:
    name: description
    description: Definition or description of the entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: description
    owner: GoldEnvironmentalContext
    domain_of:
    - NamedThing
    - Event
    - Experiment
    - Identifier
    - Name
    - Project
    - Protein
    - Sample
    range: string
  names:
    name: names
    description: Names, alternative names, and synonyms for an entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: names
    owner: GoldEnvironmentalContext
    domain_of:
    - NamedThing
    range: Name
    multivalued: true