Class: Measurement

A qualitative or quantitative observation of an attribute of an object or event against a standardized scale, to enable it to be compared with other objects or events.

URI: kb_cdm:Measurement

classDiagram class Measurement click Measurement href "../Measurement" QuantityValue <|-- Measurement click QuantityValue href "../QuantityValue" Measurement <|-- ProcessedMeasurement click ProcessedMeasurement href "../ProcessedMeasurement" Measurement : attribute_cv_term_id Measurement : attribute_name Measurement : created_at Measurement : entity_id Measurement : maximum_value Measurement : measurement_id Measurement : minimum_value Measurement : protocol_id Measurement : quality Measurement : raw_value Measurement : unit Measurement : value

Inheritance

Table
- AttributeValue
  - QuantityValue
    - Measurement
      - ProcessedMeasurement

Slots

Name	Cardinality and Range	Description	Inheritance
measurement_id	1 UUID	Internal (CDM) unique identifier for a measurement	direct
protocol_id	1 UUID	The ID of the protocol used to generate the measurement	direct
created_at	0..1 Iso8601	Timestamp for the measurement	direct
quality	0..1 String	The quality of the measurement, indicating the confidence that one can have i...	direct
maximum_value	0..1 Float	If the quantity describes a range, represents the upper bound of the range	QuantityValue
minimum_value	0..1 Float	If the quantity describes a range, represents the lower bound of the range	QuantityValue
value	0..1 Float	The numeric portion of the quantity	QuantityValue
unit	0..1 Curie	The unit of the quantity	QuantityValue
entity_id	1 UUID	The database entity (sample, feature, protein, etc	AttributeValue
attribute_name	1 String	The attribute being captured in this annotation	AttributeValue
attribute_cv_term_id	0..1 LocalCurie	If the attribute is a term from a controlled vocabulary, the ID of the term	AttributeValue
raw_value	0..1 String	Raw value from the source data	AttributeValue

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:Measurement
native	kb_cdm:Measurement

LinkML Source

Direct

name: Measurement
description: A qualitative or quantitative observation of an attribute of an object
  or event against a standardized scale, to enable it to be compared with other objects
  or events.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: QuantityValue
slots:
- measurement_id
- protocol_id
slot_usage:
  measurement_id:
    name: measurement_id
    identifier: true
  protocol_id:
    name: protocol_id
    description: The ID of the protocol used to generate the measurement.
attributes:
  created_at:
    name: created_at
    description: Timestamp for the measurement.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    domain_of:
    - Event
    - Experiment
    - Measurement
    range: iso8601
  quality:
    name: quality
    description: The quality of the measurement, indicating the confidence that one
      can have in its correctness.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    aliases:
    - confidence
    rank: 1000
    domain_of:
    - Measurement

Induced

name: Measurement
description: A qualitative or quantitative observation of an attribute of an object
  or event against a standardized scale, to enable it to be compared with other objects
  or events.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: QuantityValue
slot_usage:
  measurement_id:
    name: measurement_id
    identifier: true
  protocol_id:
    name: protocol_id
    description: The ID of the protocol used to generate the measurement.
attributes:
  created_at:
    name: created_at
    description: Timestamp for the measurement.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    alias: created_at
    owner: Measurement
    domain_of:
    - Event
    - Experiment
    - Measurement
    range: iso8601
  quality:
    name: quality
    description: The quality of the measurement, indicating the confidence that one
      can have in its correctness.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    aliases:
    - confidence
    rank: 1000
    alias: quality
    owner: Measurement
    domain_of:
    - Measurement
    range: string
  measurement_id:
    name: measurement_id
    description: Internal (CDM) unique identifier for a measurement.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    identifier: true
    alias: measurement_id
    owner: Measurement
    domain_of:
    - Entity_X_Measurement
    - Measurement
    range: UUID
    required: true
  protocol_id:
    name: protocol_id
    description: The ID of the protocol used to generate the measurement.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    alias: protocol_id
    owner: Measurement
    domain_of:
    - Protocol_X_ProtocolParticipant
    - Cluster
    - Feature
    - Protocol
    - Measurement
    range: UUID
    required: true
  maximum_value:
    name: maximum_value
    description: If the quantity describes a range, represents the upper bound of
      the range.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    rank: 1000
    alias: maximum_value
    owner: Measurement
    domain_of:
    - QuantityValue
    range: float
  minimum_value:
    name: minimum_value
    description: If the quantity describes a range, represents the lower bound of
      the range.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    rank: 1000
    alias: minimum_value
    owner: Measurement
    domain_of:
    - QuantityValue
    range: float
  value:
    name: value
    description: The numeric portion of the quantity.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    alias: value
    owner: Measurement
    domain_of:
    - QuantityValue
    - TextValue
    - Statements
    range: float
  unit:
    name: unit
    description: The unit of the quantity. Should be a term from UCUM.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    rank: 1000
    alias: unit
    owner: Measurement
    domain_of:
    - QuantityValue
    range: curie
  entity_id:
    name: entity_id
    description: The database entity (sample, feature, protein, etc.) to which the
      attribute-value annotation refers.
    from_schema: http://kbase.github.io/cdm-schema/cdm_schema
    rank: 1000
    alias: entity_id
    owner: Measurement
    domain_of:
    - Association_X_SupportingObject
    - Entity_X_Measurement
    - ClusterMember
    - Sequence
    - Entity
    - Identifier
    - Name
    - AttributeValue
    range: UUID
    required: true
  attribute_name:
    name: attribute_name
    description: The attribute being captured in this annotation.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    aliases:
    - type
    - name
    rank: 1000
    alias: attribute_name
    owner: Measurement
    domain_of:
    - AttributeValue
    range: string
    required: true
  attribute_cv_term_id:
    name: attribute_cv_term_id
    description: If the attribute is a term from a controlled vocabulary, the ID of
      the term.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    rank: 1000
    alias: attribute_cv_term_id
    owner: Measurement
    domain_of:
    - AttributeValue
    range: local_curie
  raw_value:
    name: raw_value
    description: Raw value from the source data. May or may not include units or other
      unstructured information.
    from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
    rank: 1000
    alias: raw_value
    owner: Measurement
    domain_of:
    - AttributeValue
    - Geolocation
    range: string