Class: Measurement
A qualitative or quantitative observation of an attribute of an object or event against a standardized scale, to enable it to be compared with other objects or events.
URI: kb_cdm:Measurement
classDiagram
class Measurement
click Measurement href "../Measurement"
QuantityValue <|-- Measurement
click QuantityValue href "../QuantityValue"
Measurement <|-- ProcessedMeasurement
click ProcessedMeasurement href "../ProcessedMeasurement"
Measurement : attribute_cv_term_id
Measurement : attribute_name
Measurement : created_at
Measurement : entity_id
Measurement : maximum_value
Measurement : measurement_id
Measurement : minimum_value
Measurement : protocol_id
Measurement : quality
Measurement : raw_value
Measurement : unit
Measurement : value
Inheritance
- Table
- AttributeValue
- QuantityValue
- Measurement
- QuantityValue
- AttributeValue
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
measurement_id | 1 UUID |
Internal (CDM) unique identifier for a measurement | direct |
protocol_id | 1 UUID |
The ID of the protocol used to generate the measurement | direct |
created_at | 0..1 Iso8601 |
Timestamp for the measurement | direct |
quality | 0..1 String |
The quality of the measurement, indicating the confidence that one can have i... | direct |
maximum_value | 0..1 Float |
If the quantity describes a range, represents the upper bound of the range | QuantityValue |
minimum_value | 0..1 Float |
If the quantity describes a range, represents the lower bound of the range | QuantityValue |
value | 0..1 Float |
The numeric portion of the quantity | QuantityValue |
unit | 0..1 Curie |
The unit of the quantity | QuantityValue |
entity_id | 1 UUID |
The database entity (sample, feature, protein, etc | AttributeValue |
attribute_name | 1 String |
The attribute being captured in this annotation | AttributeValue |
attribute_cv_term_id | 0..1 LocalCurie |
If the attribute is a term from a controlled vocabulary, the ID of the term | AttributeValue |
raw_value | 0..1 String |
Raw value from the source data | AttributeValue |
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/cdm_schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | kb_cdm:Measurement |
native | kb_cdm:Measurement |
LinkML Source
Direct
name: Measurement
description: A qualitative or quantitative observation of an attribute of an object
or event against a standardized scale, to enable it to be compared with other objects
or events.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: QuantityValue
slots:
- measurement_id
- protocol_id
slot_usage:
measurement_id:
name: measurement_id
identifier: true
protocol_id:
name: protocol_id
description: The ID of the protocol used to generate the measurement.
attributes:
created_at:
name: created_at
description: Timestamp for the measurement.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
domain_of:
- Event
- Experiment
- Measurement
range: iso8601
quality:
name: quality
description: The quality of the measurement, indicating the confidence that one
can have in its correctness.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
aliases:
- confidence
rank: 1000
domain_of:
- Measurement
Induced
name: Measurement
description: A qualitative or quantitative observation of an attribute of an object
or event against a standardized scale, to enable it to be compared with other objects
or events.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: QuantityValue
slot_usage:
measurement_id:
name: measurement_id
identifier: true
protocol_id:
name: protocol_id
description: The ID of the protocol used to generate the measurement.
attributes:
created_at:
name: created_at
description: Timestamp for the measurement.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
alias: created_at
owner: Measurement
domain_of:
- Event
- Experiment
- Measurement
range: iso8601
quality:
name: quality
description: The quality of the measurement, indicating the confidence that one
can have in its correctness.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
aliases:
- confidence
rank: 1000
alias: quality
owner: Measurement
domain_of:
- Measurement
range: string
measurement_id:
name: measurement_id
description: Internal (CDM) unique identifier for a measurement.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
identifier: true
alias: measurement_id
owner: Measurement
domain_of:
- Entity_X_Measurement
- Measurement
range: UUID
required: true
protocol_id:
name: protocol_id
description: The ID of the protocol used to generate the measurement.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
alias: protocol_id
owner: Measurement
domain_of:
- Protocol_X_ProtocolParticipant
- Cluster
- Feature
- Protocol
- Measurement
range: UUID
required: true
maximum_value:
name: maximum_value
description: If the quantity describes a range, represents the upper bound of
the range.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
rank: 1000
alias: maximum_value
owner: Measurement
domain_of:
- QuantityValue
range: float
minimum_value:
name: minimum_value
description: If the quantity describes a range, represents the lower bound of
the range.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
rank: 1000
alias: minimum_value
owner: Measurement
domain_of:
- QuantityValue
range: float
value:
name: value
description: The numeric portion of the quantity.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
alias: value
owner: Measurement
domain_of:
- QuantityValue
- TextValue
- Statements
range: float
unit:
name: unit
description: The unit of the quantity. Should be a term from UCUM.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
rank: 1000
alias: unit
owner: Measurement
domain_of:
- QuantityValue
range: curie
entity_id:
name: entity_id
description: The database entity (sample, feature, protein, etc.) to which the
attribute-value annotation refers.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
alias: entity_id
owner: Measurement
domain_of:
- Association_X_SupportingObject
- Entity_X_Measurement
- ClusterMember
- Sequence
- Entity
- Identifier
- Name
- AttributeValue
range: UUID
required: true
attribute_name:
name: attribute_name
description: The attribute being captured in this annotation.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
aliases:
- type
- name
rank: 1000
alias: attribute_name
owner: Measurement
domain_of:
- AttributeValue
range: string
required: true
attribute_cv_term_id:
name: attribute_cv_term_id
description: If the attribute is a term from a controlled vocabulary, the ID of
the term.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
rank: 1000
alias: attribute_cv_term_id
owner: Measurement
domain_of:
- AttributeValue
range: local_curie
raw_value:
name: raw_value
description: Raw value from the source data. May or may not include units or other
unstructured information.
from_schema: http://kbase.github.io/cdm-schema/cdm_attr_value
rank: 1000
alias: raw_value
owner: Measurement
domain_of:
- AttributeValue
- Geolocation
range: string