Class: Protein
Proteins are large, complex molecules made up of one or more long, folded chains of amino acids, whose sequences are determined by the DNA sequence of the protein-encoding gene.
URI: kb_cdm:Protein
classDiagram
class Protein
click Protein href "../Protein"
Table <|-- Protein
click Table href "../Table"
Protein : description
Protein : evidence_for_existence
Protein --> "0..1" ProteinEvidenceForExistence : evidence_for_existence
click ProteinEvidenceForExistence href "../ProteinEvidenceForExistence"
Protein : hash
Protein : length
Protein : protein_id
Protein : sequence
Inheritance
- Table
- Protein
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
protein_id | 1 UUID |
Internal (CDM) unique identifier for a protein | direct |
hash | 0..1 String |
A hash value generated from one or more object attributes that serves to ensu... | direct |
description | 0..1 String |
Brief text description of the entity | direct |
evidence_for_existence | 0..1 ProteinEvidenceForExistence |
The evidence that this protein exists | direct |
length | 0..1 Integer |
The length of the protein | direct |
sequence | 0..1 String |
The protein amino acid sequence | direct |
Usages
used by | used in | type | used |
---|---|---|---|
Association | subject | any_of[range] | Protein |
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/cdm_schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | kb_cdm:Protein |
native | kb_cdm:Protein |
LinkML Source
Direct
name: Protein
description: Proteins are large, complex molecules made up of one or more long, folded
chains of amino acids, whose sequences are determined by the DNA sequence of the
protein-encoding gene.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slots:
- protein_id
- hash
slot_usage:
protein_id:
name: protein_id
identifier: true
attributes:
description:
name: description
description: Brief text description of the entity.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
domain_of:
- Cluster
- Event
- Experiment
- Project
- Protein
- Protocol
- Sample
- Identifier
- Name
evidence_for_existence:
name: evidence_for_existence
description: The evidence that this protein exists. For example, the protein may
have been isolated from a cell, or it may be predicted based on sequence features.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
domain_of:
- Protein
range: ProteinEvidenceForExistence
length:
name: length
description: The length of the protein.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
domain_of:
- Contig
- Protein
- Sequence
range: integer
sequence:
name: sequence
description: The protein amino acid sequence.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
domain_of:
- Protein
Induced
name: Protein
description: Proteins are large, complex molecules made up of one or more long, folded
chains of amino acids, whose sequences are determined by the DNA sequence of the
protein-encoding gene.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
is_a: Table
slot_usage:
protein_id:
name: protein_id
identifier: true
attributes:
description:
name: description
description: Brief text description of the entity.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
alias: description
owner: Protein
domain_of:
- Cluster
- Event
- Experiment
- Project
- Protein
- Protocol
- Sample
- Identifier
- Name
range: string
evidence_for_existence:
name: evidence_for_existence
description: The evidence that this protein exists. For example, the protein may
have been isolated from a cell, or it may be predicted based on sequence features.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
alias: evidence_for_existence
owner: Protein
domain_of:
- Protein
range: ProteinEvidenceForExistence
length:
name: length
description: The length of the protein.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
alias: length
owner: Protein
domain_of:
- Contig
- Protein
- Sequence
range: integer
sequence:
name: sequence
description: The protein amino acid sequence.
from_schema: http://kbase.github.io/cdm-schema/cdm_components
rank: 1000
alias: sequence
owner: Protein
domain_of:
- Protein
range: string
protein_id:
name: protein_id
description: Internal (CDM) unique identifier for a protein.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
identifier: true
alias: protein_id
owner: Protein
domain_of:
- Contig_X_Protein
- ContigCollection_X_Protein
- Feature_X_Protein
- Protein
range: UUID
required: true
hash:
name: hash
description: A hash value generated from one or more object attributes that serves
to ensure the entity is unique.
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
alias: hash
owner: Protein
domain_of:
- Contig
- ContigCollection
- EncodedFeature
- Feature
- Protein
range: string