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Class: Protocol

Defined method or set of methods .

URI: kb_cdm:Protocol

classDiagram class Protocol click Protocol href "../Protocol" NamedThingWithId <|-- Protocol click NamedThingWithId href "../NamedThingWithId" Protocol : description Protocol : doi Protocol : identifiers Protocol --> "*" Identifier : identifiers click Identifier href "../Identifier" Protocol : inputs Protocol --> "*" ProtocolParticipant : inputs click ProtocolParticipant href "../ProtocolParticipant" Protocol : names Protocol --> "*" Name : names click Name href "../Name" Protocol : outputs Protocol --> "*" ProtocolParticipant : outputs click ProtocolParticipant href "../ProtocolParticipant" Protocol : protocol_id Protocol : url Protocol : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
doi 0..1
String		 The DOI for a protocol direct
inputs *
ProtocolParticipant		 The inputs for a protocol; may be software parameters, experimental reagents,... direct
outputs *
ProtocolParticipant		 The outputs of a protocol; may be physical entities, files, etc direct
protocol_id 1
UUID		 Internal (CDM) unique identifier direct
version 0..1
String		 The version of the protocol that has been used direct
url 0..1
String		 The URL for a protocol direct
identifiers *
Identifier		 URIs or CURIEs used to refer to this entity NamedThingWithId
description 0..1
String		 Definition or description of the entity NamedThing
names *
Name		 Names, alternative names, and synonyms for an entity NamedThing

Usages

used by used in type used
Feature generated_by range Protocol
Feature source_protocol range Protocol
Measurement protocol_id range Protocol
ProcessedMeasurement protocol_id range Protocol

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self kb_cdm:Protocol
native kb_cdm:Protocol

LinkML Source

Direct

name: Protocol
description: Defined method or set of methods .
from_schema: https://github.com/kbase/cdm-schema
is_a: NamedThingWithId
attributes:
  doi:
    name: doi
    description: The DOI for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
  inputs:
    name: inputs
    description: The inputs for a protocol; may be software parameters, experimental
      reagents, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  outputs:
    name: outputs
    description: The outputs of a protocol; may be physical entities, files, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  protocol_id:
    name: protocol_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    identifier: true
    domain_of:
    - FeatureXProtein
    - Measurement
    - Protocol
    range: UUID
    required: true
  version:
    name: version
    description: The version of the protocol that has been used.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
  url:
    name: url
    description: The URL for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol

Induced

name: Protocol
description: Defined method or set of methods .
from_schema: https://github.com/kbase/cdm-schema
is_a: NamedThingWithId
attributes:
  doi:
    name: doi
    description: The DOI for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: doi
    owner: Protocol
    domain_of:
    - Protocol
    range: string
  inputs:
    name: inputs
    description: The inputs for a protocol; may be software parameters, experimental
      reagents, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: inputs
    owner: Protocol
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  outputs:
    name: outputs
    description: The outputs of a protocol; may be physical entities, files, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: outputs
    owner: Protocol
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  protocol_id:
    name: protocol_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    identifier: true
    alias: protocol_id
    owner: Protocol
    domain_of:
    - FeatureXProtein
    - Measurement
    - Protocol
    range: UUID
    required: true
  version:
    name: version
    description: The version of the protocol that has been used.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: version
    owner: Protocol
    domain_of:
    - Protocol
    range: string
  url:
    name: url
    description: The URL for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: url
    owner: Protocol
    domain_of:
    - Protocol
    range: string
  identifiers:
    name: identifiers
    description: URIs or CURIEs used to refer to this entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: identifiers
    owner: Protocol
    domain_of:
    - NamedThingWithId
    range: Identifier
    multivalued: true
  description:
    name: description
    description: Definition or description of the entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: description
    owner: Protocol
    domain_of:
    - NamedThing
    - Event
    - Experiment
    - Identifier
    - Name
    - Project
    - Protein
    - Sample
    range: string
  names:
    name: names
    description: Names, alternative names, and synonyms for an entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: names
    owner: Protocol
    domain_of:
    - NamedThing
    range: Name
    multivalued: true