Class: Protocol

A defined method or set of methods.

classDiagram class Protocol click Protocol href "../Protocol/" Table <|-- Protocol click Table href "../Table/" Protocol : description Protocol : doi Protocol : name Protocol : protocol_id Protocol : url Protocol : version

Inheritance

Table
- Protocol

Slots

Name	Cardinality and Range	Description	Inheritance
protocol_id	1 CdmProtocolId	Internal (CDM) unique identifier for a protocol. From the Entity table: entity_id where entity_type == 'Protocol'.	direct
name	0..1 String	A string used as a name or title.	direct
description	0..1 String	Brief text description of the protocol.	direct
doi	0..1 Curie	The DOI for a protocol.	direct
url	0..1 Uri	The URL for a protocol.	direct
version	0..1 String	The version of the protocol that has been used.	direct

Usages

used by	used in	type	used
Schema	protocols	range	Protocol

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:Protocol
native	kb_cdm:Protocol

LinkML Source

Direct

name: Protocol
description: A defined method or set of methods.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: Table
slots:
- protocol_id
- name
slot_usage:
  protocol_id:
    name: protocol_id
    identifier: true
attributes:
  description:
    name: description
    description: Brief text description of the protocol.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    domain_of:
    - Cluster
    - Event
    - Identifier
    - Name
    - Project
    - Experiment
    - Parameter
    - Protocol
    - ProtocolExecution
    - Variable
    - Protein
    - Sample
  doi:
    name: doi
    description: The DOI for a protocol.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    rank: 1000
    domain_of:
    - Protocol
    range: curie
  url:
    name: url
    description: The URL for a protocol.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    domain_of:
    - DataSourceNew
    - License
    - Protocol
    range: uri
  version:
    name: version
    description: The version of the protocol that has been used.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    domain_of:
    - DataSourceNew
    - Protocol

Induced

name: Protocol
description: A defined method or set of methods.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: Table
slot_usage:
  protocol_id:
    name: protocol_id
    identifier: true
attributes:
  description:
    name: description
    description: Brief text description of the protocol.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    alias: description
    owner: Protocol
    domain_of:
    - Cluster
    - Event
    - Identifier
    - Name
    - Project
    - Experiment
    - Parameter
    - Protocol
    - ProtocolExecution
    - Variable
    - Protein
    - Sample
    range: string
  doi:
    name: doi
    description: The DOI for a protocol.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    rank: 1000
    alias: doi
    owner: Protocol
    domain_of:
    - Protocol
    range: curie
  url:
    name: url
    description: The URL for a protocol.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    alias: url
    owner: Protocol
    domain_of:
    - DataSourceNew
    - License
    - Protocol
    range: uri
  version:
    name: version
    description: The version of the protocol that has been used.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_protocol
    alias: version
    owner: Protocol
    domain_of:
    - DataSourceNew
    - Protocol
    range: string
  protocol_id:
    name: protocol_id
    description: 'Internal (CDM) unique identifier for a protocol.

      From the Entity table: entity_id where entity_type == ''Protocol''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    slot_uri: CDM:protocol_id
    identifier: true
    alias: protocol_id
    owner: Protocol
    domain_of:
    - Cluster
    - Experiment
    - OrderedProtocolStep
    - Protocol
    - ProtocolExecution
    - ProtocolVariable
    - Feature
    range: cdm_protocol_id
    required: true
  name:
    name: name
    description: A string used as a name or title.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Protocol
    domain_of:
    - Cluster
    - Event
    - Name
    - Contributor
    - DataSource
    - DataSourceNew
    - License
    - Experiment
    - Parameter
    - Protocol
    - ProtocolExecution
    - Variable
    range: string