Class: Protocol

Defined method or set of methods .

classDiagram class Protocol click Protocol href "../Protocol" HasNames <|-- Protocol click HasNames href "../HasNames" HasIdentifiers <|-- Protocol click HasIdentifiers href "../HasIdentifiers" Protocol : doi Protocol : identifiers Protocol --> "*" Identifier : identifiers click Identifier href "../Identifier" Protocol : inputs Protocol --> "*" ProtocolParticipant : inputs click ProtocolParticipant href "../ProtocolParticipant" Protocol : names Protocol --> "*" Name : names click Name href "../Name" Protocol : outputs Protocol --> "*" ProtocolParticipant : outputs click ProtocolParticipant href "../ProtocolParticipant" Protocol : protocol_id Protocol : url Protocol : version

Inheritance

Protocol [ HasNames HasIdentifiers]

Slots

Name	Cardinality and Range	Description	Inheritance
doi	0..1 String	The DOI for a protocol	direct
inputs	* ProtocolParticipant	The inputs for a protocol; may be software parameters, experimental reagents,...	direct
outputs	* ProtocolParticipant	The outputs of a protocol; may be physical entities, files, etc	direct
protocol_id	1 UUID	Internal (CDM) unique identifier	direct
version	0..1 String	The version of the protocol that has been used	direct
url	0..1 String	The URL for a protocol	direct
names	* Name	Names, alternative names, and synonyms for an entity	HasNames
identifiers	* Identifier	URIs or CURIEs used to refer to this entity	HasIdentifiers

Usages

used by	used in	type	used
Feature	generated_by	range	Protocol
Feature	protocol_id	range	Protocol
Measurement	protocol_id	range	Protocol
ProcessedMeasurement	protocol_id	range	Protocol

Identifier and Mapping Information

Schema Source

from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type	Mapped Value
self	cdm:Protocol
native	cdm:Protocol

LinkML Source

Direct

name: Protocol
description: Defined method or set of methods .
from_schema: https://github.com/kbase/cdm-schema
mixins:
- HasNames
- HasIdentifiers
attributes:
  doi:
    name: doi
    description: The DOI for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
  inputs:
    name: inputs
    description: The inputs for a protocol; may be software parameters, experimental
      reagents, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  outputs:
    name: outputs
    description: The outputs of a protocol; may be physical entities, files, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  protocol_id:
    name: protocol_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    identifier: true
    domain_of:
    - Cluster
    - Feature
    - Measurement
    - Protocol
    range: UUID
    required: true
  version:
    name: version
    description: The version of the protocol that has been used.
    from_schema: https://github.com/kbase/cdm-schema
    domain_of:
    - DataSource
    - Protocol
  url:
    name: url
    description: The URL for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    domain_of:
    - DataSource
    - Protocol

Induced

name: Protocol
description: Defined method or set of methods .
from_schema: https://github.com/kbase/cdm-schema
mixins:
- HasNames
- HasIdentifiers
attributes:
  doi:
    name: doi
    description: The DOI for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: doi
    owner: Protocol
    domain_of:
    - Protocol
    range: string
  inputs:
    name: inputs
    description: The inputs for a protocol; may be software parameters, experimental
      reagents, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: inputs
    owner: Protocol
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  outputs:
    name: outputs
    description: The outputs of a protocol; may be physical entities, files, etc.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: outputs
    owner: Protocol
    domain_of:
    - Protocol
    range: ProtocolParticipant
    multivalued: true
  protocol_id:
    name: protocol_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    identifier: true
    alias: protocol_id
    owner: Protocol
    domain_of:
    - Cluster
    - Feature
    - Measurement
    - Protocol
    range: UUID
    required: true
  version:
    name: version
    description: The version of the protocol that has been used.
    from_schema: https://github.com/kbase/cdm-schema
    alias: version
    owner: Protocol
    domain_of:
    - DataSource
    - Protocol
    range: string
  url:
    name: url
    description: The URL for a protocol.
    from_schema: https://github.com/kbase/cdm-schema
    alias: url
    owner: Protocol
    domain_of:
    - DataSource
    - Protocol
    range: string
  names:
    name: names
    description: Names, alternative names, and synonyms for an entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: names
    owner: Protocol
    domain_of:
    - HasNames
    range: Name
    multivalued: true
  identifiers:
    name: identifiers
    description: URIs or CURIEs used to refer to this entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: identifiers
    owner: Protocol
    domain_of:
    - HasIdentifiers
    range: Identifier
    multivalued: true