Enum: RefSeqStatusType

RefSeq status codes, taken from https://www.ncbi.nlm.nih.gov/genbank/evidence/.

__

Permissible Values

Value	Meaning	Description
MODEL	None	The RefSeq record is provided by the NCBI Genome Annotation pipeline and is n...
INFERRED	None	The RefSeq record has been predicted by genome sequence analysis, but it is n...
PREDICTED	None	The RefSeq record has not yet been subject to individual review, and some asp...
PROVISIONAL	None	The RefSeq record has not yet been subject to individual review
REVIEWED	None	The RefSeq record has been reviewed by NCBI staff or by a collaborator
VALIDATED	None	The RefSeq record has undergone an initial review to provide the preferred se...
WGS	None	The RefSeq record is provided to represent a collection of whole genome shotg...

Identifier and Mapping Information

Schema Source

from schema: https://github.com/kbase/cdm-schema

LinkML Source

name: RefSeqStatusType
description: 'RefSeq status codes, taken from https://www.ncbi.nlm.nih.gov/genbank/evidence/.

  '
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
permissible_values:
  MODEL:
    text: MODEL
    description: The RefSeq record is provided by the NCBI Genome Annotation pipeline
      and is not subject to individual review or revision between annotation runs.
  INFERRED:
    text: INFERRED
    description: The RefSeq record has been predicted by genome sequence analysis,
      but it is not yet supported by experimental evidence. The record may be partially
      supported by homology data.
  PREDICTED:
    text: PREDICTED
    description: The RefSeq record has not yet been subject to individual review,
      and some aspect of the RefSeq record is predicted.
  PROVISIONAL:
    text: PROVISIONAL
    description: The RefSeq record has not yet been subject to individual review.
      The initial sequence-to-gene association has been established by outside collaborators
      or NCBI staff.
  REVIEWED:
    text: REVIEWED
    description: The RefSeq record has been reviewed by NCBI staff or by a collaborator.
      The NCBI review process includes assessing available sequence data and the literature.
      Some RefSeq records may incorporate expanded sequence and annotation information.
  VALIDATED:
    text: VALIDATED
    description: The RefSeq record has undergone an initial review to provide the
      preferred sequence standard. The record has not yet been subject to final review
      at which time additional functional information may be provided.
  WGS:
    text: WGS
    description: The RefSeq record is provided to represent a collection of whole
      genome shotgun sequences. These records are not subject to individual review
      or revisions between genome updates.