Class: Sample

A material entity that can be characterised by an experiment.

classDiagram class Sample click Sample href "../Sample/" Table <|-- Sample click Table href "../Table/" Sample : description Sample : sample_id Sample : type

Inheritance

Table
- Sample

Slots

Name	Cardinality and Range	Description	Inheritance
sample_id	1 CdmSampleId	Internal (CDM) unique identifier for a sample. From the Entity table: entity_id where entity_type == 'Sample'.	direct
description	0..1 String	Brief textual description of the sample.	direct
type	0..1 String	The type of entity that the sample is. Vocab TBD.	direct

Usages

used by	used in	type	used
Schema	samples	range	Sample

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:Sample
native	kb_cdm:Sample

LinkML Source

Direct

name: Sample
description: A material entity that can be characterised by an experiment.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: Table
slots:
- sample_id
slot_usage:
  sample_id:
    name: sample_id
    identifier: true
attributes:
  description:
    name: description
    description: Brief textual description of the sample.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_bioentity
    domain_of:
    - Cluster
    - Event
    - Identifier
    - Name
    - Project
    - Experiment
    - Parameter
    - Protocol
    - ProtocolExecution
    - Variable
    - Protein
    - Sample
  type:
    name: type
    description: The type of entity that the sample is. Vocab TBD.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_bioentity
    domain_of:
    - AttributeValue
    - EncodedFeature
    - Feature
    - Sample
    - Sequence

Induced

name: Sample
description: A material entity that can be characterised by an experiment.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
is_a: Table
slot_usage:
  sample_id:
    name: sample_id
    identifier: true
attributes:
  description:
    name: description
    description: Brief textual description of the sample.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_bioentity
    alias: description
    owner: Sample
    domain_of:
    - Cluster
    - Event
    - Identifier
    - Name
    - Project
    - Experiment
    - Parameter
    - Protocol
    - ProtocolExecution
    - Variable
    - Protein
    - Sample
    range: string
  type:
    name: type
    description: The type of entity that the sample is. Vocab TBD.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_bioentity
    alias: type
    owner: Sample
    domain_of:
    - AttributeValue
    - EncodedFeature
    - Feature
    - Sample
    - Sequence
    range: string
  sample_id:
    name: sample_id
    description: 'Internal (CDM) unique identifier for a sample.

      From the Entity table: entity_id where entity_type == ''Sample''.

      '
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    identifier: true
    alias: sample_id
    owner: Sample
    domain_of:
    - Sample
    range: cdm_sample_id
    required: true