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Class: Sample

A material entity that can be characterised by an experiment.

URI: cdm:Sample

classDiagram class Sample click Sample href "../Sample" HasNames <|-- Sample click HasNames href "../HasNames" HasIdentifiers <|-- Sample click HasIdentifiers href "../HasIdentifiers" Sample : description Sample : identifiers Sample --> "*" Identifier : identifiers click Identifier href "../Identifier" Sample : names Sample --> "*" Name : names click Name href "../Name" Sample : sample_id Sample --> "1" Entity : sample_id click Entity href "../Entity" Sample : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
description 0..1
String		 Brief textual description of the sample direct
sample_id 1
Entity		 Internal (CDM) unique identifier direct
type 0..1
String		 The type of entity that the sample is direct
names *
Name		 Names, alternative names, and synonyms for an entity HasNames
identifiers *
Identifier		 URIs or CURIEs used to refer to this entity HasIdentifiers

Usages

used by used in type used
Experiment has_participant range Sample

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self cdm:Sample
native cdm:Sample

LinkML Source

Direct

name: Sample
description: A material entity that can be characterised by an experiment.
from_schema: https://github.com/kbase/cdm-schema
mixins:
- HasNames
- HasIdentifiers
attributes:
  description:
    name: description
    description: Brief textual description of the sample.
    from_schema: https://github.com/kbase/cdm-schema
    domain_of:
    - Cluster
    - Event
    - Experiment
    - Project
    - Protein
    - Sample
    - Identifier
    - Name
  sample_id:
    name: sample_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    identifier: true
    domain_of:
    - Sample
    range: Entity
    required: true
  type:
    name: type
    description: The type of entity that the sample is. Vocab TBD.
    from_schema: https://github.com/kbase/cdm-schema
    domain_of:
    - EncodedFeature
    - Feature
    - Measurement
    - Sample
    - AttributeValue

Induced

name: Sample
description: A material entity that can be characterised by an experiment.
from_schema: https://github.com/kbase/cdm-schema
mixins:
- HasNames
- HasIdentifiers
attributes:
  description:
    name: description
    description: Brief textual description of the sample.
    from_schema: https://github.com/kbase/cdm-schema
    alias: description
    owner: Sample
    domain_of:
    - Cluster
    - Event
    - Experiment
    - Project
    - Protein
    - Sample
    - Identifier
    - Name
    range: string
  sample_id:
    name: sample_id
    description: Internal (CDM) unique identifier.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    identifier: true
    alias: sample_id
    owner: Sample
    domain_of:
    - Sample
    range: Entity
    required: true
  type:
    name: type
    description: The type of entity that the sample is. Vocab TBD.
    from_schema: https://github.com/kbase/cdm-schema
    alias: type
    owner: Sample
    domain_of:
    - EncodedFeature
    - Feature
    - Measurement
    - Sample
    - AttributeValue
    range: string
  names:
    name: names
    description: Names, alternative names, and synonyms for an entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: names
    owner: Sample
    domain_of:
    - HasNames
    range: Name
    multivalued: true
  identifiers:
    name: identifiers
    description: URIs or CURIEs used to refer to this entity.
    from_schema: https://github.com/kbase/cdm-schema
    rank: 1000
    alias: identifiers
    owner: Sample
    domain_of:
    - HasIdentifiers
    range: Identifier
    multivalued: true