Class: Schema

The root class for the CDM schema.

NOTE: this is an abstract class and should not be instantiated directly

classDiagram class Schema click Schema href "../Schema/" Schema : association_x_supporting_objects Schema --> "*" AssociationXSupportingObject : association_x_supporting_objects click AssociationXSupportingObject href "../AssociationXSupportingObject/" Schema : associations Schema --> "*" Association : associations click Association href "../Association/" Schema : cluster_members Schema --> "*" ClusterMember : cluster_members click ClusterMember href "../ClusterMember/" Schema : clusters Schema --> "*" Cluster : clusters click Cluster href "../Cluster/" Schema : contig_collection_x_encoded_features Schema --> "*" ContigCollectionXEncodedFeature : contig_collection_x_encoded_features click ContigCollectionXEncodedFeature href "../ContigCollectionXEncodedFeature/" Schema : contig_collection_x_features Schema --> "*" ContigCollectionXFeature : contig_collection_x_features click ContigCollectionXFeature href "../ContigCollectionXFeature/" Schema : contig_collection_x_proteins Schema --> "*" ContigCollectionXProtein : contig_collection_x_proteins click ContigCollectionXProtein href "../ContigCollectionXProtein/" Schema : contig_collections Schema --> "*" ContigCollection : contig_collections click ContigCollection href "../ContigCollection/" Schema : contig_x_contig_collections Schema --> "*" ContigXContigCollection : contig_x_contig_collections click ContigXContigCollection href "../ContigXContigCollection/" Schema : contig_x_encoded_features Schema --> "*" ContigXEncodedFeature : contig_x_encoded_features click ContigXEncodedFeature href "../ContigXEncodedFeature/" Schema : contig_x_features Schema --> "*" ContigXFeature : contig_x_features click ContigXFeature href "../ContigXFeature/" Schema : contig_x_proteins Schema --> "*" ContigXProtein : contig_x_proteins click ContigXProtein href "../ContigXProtein/" Schema : contigs Schema --> "*" Contig : contigs click Contig href "../Contig/" Schema : contributor_affiliations Schema --> "*" ContributorAffiliation : contributor_affiliations click ContributorAffiliation href "../ContributorAffiliation/" Schema : contributor_x_role_x_project Schema --> "*" ContributorXRoleXProject : contributor_x_role_x_project click ContributorXRoleXProject href "../ContributorXRoleXProject/" Schema : contributors Schema --> "*" Contributor : contributors click Contributor href "../Contributor/" Schema : data_source_x_descriptions Schema --> "*" DataSourceXDescription : data_source_x_descriptions click DataSourceXDescription href "../DataSourceXDescription/" Schema : data_source_x_funding_references Schema --> "*" DataSourceXFundingReference : data_source_x_funding_references click DataSourceXFundingReference href "../DataSourceXFundingReference/" Schema : data_source_x_licenses Schema --> "*" DataSourceXLicense : data_source_x_licenses click DataSourceXLicense href "../DataSourceXLicense/" Schema : data_source_x_titles Schema --> "*" DataSourceXTitle : data_source_x_titles click DataSourceXTitle href "../DataSourceXTitle/" Schema : data_sources Schema --> "*" DataSourceNew : data_sources click DataSourceNew href "../DataSourceNew/" Schema : encoded_feature_x_features Schema --> "*" EncodedFeatureXFeature : encoded_feature_x_features click EncodedFeatureXFeature href "../EncodedFeatureXFeature/" Schema : encoded_feature_x_proteins Schema --> "*" EncodedFeatureXProtein : encoded_feature_x_proteins click EncodedFeatureXProtein href "../EncodedFeatureXProtein/" Schema : encoded_features Schema --> "*" EncodedFeature : encoded_features click EncodedFeature href "../EncodedFeature/" Schema : entailed_edges Schema --> "*" EntailedEdge : entailed_edges click EntailedEdge href "../EntailedEdge/" Schema : entities Schema --> "*" Entity : entities click Entity href "../Entity/" Schema : entity_attribute_values Schema --> "*" EntityAttributeValue : entity_attribute_values click EntityAttributeValue href "../EntityAttributeValue/" Schema : entity_identifiers Schema --> "*" EntityIdentifiers : entity_identifiers click EntityIdentifiers href "../EntityIdentifiers/" Schema : entity_names Schema --> "*" EntityNames : entity_names click EntityNames href "../EntityNames/" Schema : events Schema --> "*" Event : events click Event href "../Event/" Schema : experiment_condition_sets Schema --> "*" ExperimentConditionSet : experiment_condition_sets click ExperimentConditionSet href "../ExperimentConditionSet/" Schema : experiment_conditions Schema --> "*" ExperimentCondition : experiment_conditions click ExperimentCondition href "../ExperimentCondition/" Schema : experiments Schema --> "*" Experiment : experiments click Experiment href "../Experiment/" Schema : feature_x_proteins Schema --> "*" FeatureXProtein : feature_x_proteins click FeatureXProtein href "../FeatureXProtein/" Schema : features Schema --> "*" Feature : features click Feature href "../Feature/" Schema : funding_references Schema --> "*" FundingReference : funding_references click FundingReference href "../FundingReference/" Schema : gold_environmental_contexts Schema --> "*" GoldEnvironmentalContext : gold_environmental_contexts click GoldEnvironmentalContext href "../GoldEnvironmentalContext/" Schema : identifiers Schema --> "*" Identifier : identifiers click Identifier href "../Identifier/" Schema : licenses Schema --> "*" License : licenses click License href "../License/" Schema : measurement_sets Schema --> "*" MeasurementSet : measurement_sets click MeasurementSet href "../MeasurementSet/" Schema : measurements Schema --> "*" Measurement : measurements click Measurement href "../Measurement/" Schema : mixs_environmental_contexts Schema --> "*" MixsEnvironmentalContext : mixs_environmental_contexts click MixsEnvironmentalContext href "../MixsEnvironmentalContext/" Schema : names Schema --> "*" Name : names click Name href "../Name/" Schema : ordered_protocol_steps Schema --> "*" OrderedProtocolStep : ordered_protocol_steps click OrderedProtocolStep href "../OrderedProtocolStep/" Schema : parameters Schema --> "*" Parameter : parameters click Parameter href "../Parameter/" Schema : prefixes Schema --> "*" Prefix : prefixes click Prefix href "../Prefix/" Schema : projects Schema --> "*" Project : projects click Project href "../Project/" Schema : proteins Schema --> "*" Protein : proteins click Protein href "../Protein/" Schema : protocol_executions Schema --> "*" ProtocolExecution : protocol_executions click ProtocolExecution href "../ProtocolExecution/" Schema : protocol_input_sets Schema --> "*" ProtocolInputSet : protocol_input_sets click ProtocolInputSet href "../ProtocolInputSet/" Schema : protocol_inputs Schema --> "*" ProtocolInput : protocol_inputs click ProtocolInput href "../ProtocolInput/" Schema : protocol_outputs Schema --> "*" ProtocolOutput : protocol_outputs click ProtocolOutput href "../ProtocolOutput/" Schema : protocol_steps Schema --> "*" ProtocolStep : protocol_steps click ProtocolStep href "../ProtocolStep/" Schema : protocol_variables Schema --> "*" ProtocolVariable : protocol_variables click ProtocolVariable href "../ProtocolVariable/" Schema : protocols Schema --> "*" Protocol : protocols click Protocol href "../Protocol/" Schema : publications Schema --> "*" Publication : publications click Publication href "../Publication/" Schema : resource_descriptions Schema --> "*" ResourceDescription : resource_descriptions click ResourceDescription href "../ResourceDescription/" Schema : resource_titles Schema --> "*" ResourceTitle : resource_titles click ResourceTitle href "../ResourceTitle/" Schema : samples Schema --> "*" Sample : samples click Sample href "../Sample/" Schema : sequences Schema --> "*" Sequence : sequences click Sequence href "../Sequence/" Schema : statements Schema --> "*" Statement : statements click Statement href "../Statement/" Schema : variable_values Schema --> "*" VariableValue : variable_values click VariableValue href "../VariableValue/" Schema : variables Schema --> "*" Variable : variables click Variable href "../Variable/"

Slots

Name	Cardinality and Range	Description	Inheritance
entities	* Entity	All entities in the schema.	direct
names	* Name	All names in the schema.	direct
identifiers	* Identifier	All identifiers in the schema.	direct
entity_names	* EntityNames	All name x entity records in the schema.	direct
entity_identifiers	* EntityIdentifiers	All identifier x entity records in the schema.	direct
entity_attribute_values	* EntityAttributeValue	All entity attribute values in the schema.	direct
associations	* Association	All associations in the schema.	direct
clusters	* Cluster	All clusters in the schema.	direct
cluster_members	* ClusterMember	All cluster members in the schema.	direct
events	* Event	All events in the schema.	direct
gold_environmental_contexts	* GoldEnvironmentalContext	All GOLD environmental contexts in the schema.	direct
mixs_environmental_contexts	* MixsEnvironmentalContext	All MIxS environmental contexts in the schema.	direct
contributors	* Contributor	All contributors in the schema.	direct
contributor_affiliations	* ContributorAffiliation	All contributor affiliations in the schema.	direct
contributor_x_role_x_project	* ContributorXRoleXProject	All contributor x role x project records in the schema.	direct
data_sources	* DataSourceNew	All data sources in the schema.	direct
data_source_x_descriptions	* DataSourceXDescription	All data source descriptions in the schema.	direct
data_source_x_funding_references	* DataSourceXFundingReference	All data source x funding reference records in the schema.	direct
data_source_x_licenses	* DataSourceXLicense	All data source x license records in the schema.	direct
data_source_x_titles	* DataSourceXTitle	All data source x title records in the schema.	direct
funding_references	* FundingReference	All funding references in the schema.	direct
licenses	* License	All licenses in the schema.	direct
projects	* Project	All projects in the schema.	direct
publications	* Publication	All publications in the schema.	direct
resource_descriptions	* ResourceDescription	All resource descriptions in the schema.	direct
resource_titles	* ResourceTitle	All resource titles in the schema.	direct
prefixes	* Prefix	The prefix mappings for the schema.	direct
statements	* Statement	All statements in the schema.	direct
entailed_edges	* EntailedEdge	All entailed edges in the schema.	direct
contigs	* Contig	All contigs in the schema.	direct
contig_collections	* ContigCollection	All contig collections in the schema.	direct
encoded_features	* EncodedFeature	All encoded features in the schema.	direct
features	* Feature	All features in the schema.	direct
proteins	* Protein	All proteins in the schema.	direct
samples	* Sample	All samples in the schema.	direct
sequences	* Sequence	All sequences in the schema.	direct
experiments	* Experiment	All experiments in the schema.	direct
experiment_conditions	* ExperimentCondition	All experiment conditions in the schema.	direct
experiment_condition_sets	* ExperimentConditionSet	All experiment condition sets in the schema.	direct
measurements	* Measurement	All measurements in the schema.	direct
measurement_sets	* MeasurementSet	All measurement sets in the schema.	direct
ordered_protocol_steps	* OrderedProtocolStep	All ordered protocol steps in the schema.	direct
parameters	* Parameter	All parameters in the schema.	direct
protocols	* Protocol	All protocols in the schema.	direct
protocol_executions	* ProtocolExecution	All protocol executions in the schema.	direct
protocol_inputs	* ProtocolInput	All protocol inputs in the schema.	direct
protocol_input_sets	* ProtocolInputSet	All protocol input sets in the schema.	direct
protocol_outputs	* ProtocolOutput	All protocol outputs in the schema.	direct
protocol_steps	* ProtocolStep	All protocol steps in the schema.	direct
protocol_variables	* ProtocolVariable	All protocol variables in the schema.	direct
variables	* Variable	All variables in the schema.	direct
variable_values	* VariableValue	All variable values in the schema.	direct
association_x_supporting_objects	* AssociationXSupportingObject	All association x supporting object records in the schema.	direct
contig_x_contig_collections	* ContigXContigCollection	All contig x contig collection records in the schema.	direct
contig_x_encoded_features	* ContigXEncodedFeature	All contig x encoded feature records in the schema.	direct
contig_x_features	* ContigXFeature	All contig x feature records in the schema.	direct
contig_x_proteins	* ContigXProtein	All contig x protein records in the schema.	direct
contig_collection_x_encoded_features	* ContigCollectionXEncodedFeature	All contig collection x encoded feature records in the schema.	direct
contig_collection_x_features	* ContigCollectionXFeature	All contig collection x feature records in the schema.	direct
contig_collection_x_proteins	* ContigCollectionXProtein	All contig collection x protein records in the schema.	direct
encoded_feature_x_features	* EncodedFeatureXFeature	All encoded feature x feature records in the schema.	direct
encoded_feature_x_proteins	* EncodedFeatureXProtein	All encoded feature x protein records in the schema.	direct
feature_x_proteins	* FeatureXProtein	All feature x protein records in the schema.	direct

Identifier and Mapping Information

Schema Source

from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type	Mapped Value
self	kb_cdm:Schema
native	kb_cdm:Schema

LinkML Source

Direct

name: Schema
description: The root class for the CDM schema.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
abstract: true
attributes:
  entities:
    name: entities
    description: All entities in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Entity
    multivalued: true
  names:
    name: names
    description: All names in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Name
    multivalued: true
  identifiers:
    name: identifiers
    description: All identifiers in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Identifier
    multivalued: true
  entity_names:
    name: entity_names
    description: All name x entity records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EntityNames
    multivalued: true
  entity_identifiers:
    name: entity_identifiers
    description: All identifier x entity records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EntityIdentifiers
    multivalued: true
  entity_attribute_values:
    name: entity_attribute_values
    description: All entity attribute values in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EntityAttributeValue
    multivalued: true
  associations:
    name: associations
    description: All associations in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Association
    multivalued: true
  clusters:
    name: clusters
    description: All clusters in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Cluster
    multivalued: true
  cluster_members:
    name: cluster_members
    description: All cluster members in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ClusterMember
    multivalued: true
  events:
    name: events
    description: All events in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Event
    multivalued: true
  gold_environmental_contexts:
    name: gold_environmental_contexts
    description: All GOLD environmental contexts in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: GoldEnvironmentalContext
    multivalued: true
  mixs_environmental_contexts:
    name: mixs_environmental_contexts
    description: All MIxS environmental contexts in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: MixsEnvironmentalContext
    multivalued: true
  contributors:
    name: contributors
    description: All contributors in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contributor
    multivalued: true
  contributor_affiliations:
    name: contributor_affiliations
    description: All contributor affiliations in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ContributorAffiliation
    multivalued: true
  contributor_x_role_x_project:
    name: contributor_x_role_x_project
    description: All contributor x role x project records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contributor_x_Role_x_Project
    multivalued: true
  data_sources:
    name: data_sources
    description: All data sources in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: DataSourceNew
    multivalued: true
  data_source_x_descriptions:
    name: data_source_x_descriptions
    description: All data source descriptions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: DataSource_x_Description
    multivalued: true
  data_source_x_funding_references:
    name: data_source_x_funding_references
    description: All data source x funding reference records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: DataSource_x_FundingReference
    multivalued: true
  data_source_x_licenses:
    name: data_source_x_licenses
    description: All data source x license records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: DataSource_x_License
    multivalued: true
  data_source_x_titles:
    name: data_source_x_titles
    description: All data source x title records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: DataSource_x_Title
    multivalued: true
  funding_references:
    name: funding_references
    description: All funding references in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: FundingReference
    multivalued: true
  licenses:
    name: licenses
    description: All licenses in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: License
    multivalued: true
  projects:
    name: projects
    description: All projects in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Project
    multivalued: true
  publications:
    name: publications
    description: All publications in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Publication
    multivalued: true
  resource_descriptions:
    name: resource_descriptions
    description: All resource descriptions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ResourceDescription
    multivalued: true
  resource_titles:
    name: resource_titles
    description: All resource titles in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ResourceTitle
    multivalued: true
  prefixes:
    name: prefixes
    description: The prefix mappings for the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Prefix
    multivalued: true
  statements:
    name: statements
    description: All statements in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Statement
    multivalued: true
  entailed_edges:
    name: entailed_edges
    description: All entailed edges in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EntailedEdge
    multivalued: true
  contigs:
    name: contigs
    description: All contigs in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contig
    multivalued: true
  contig_collections:
    name: contig_collections
    description: All contig collections in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ContigCollection
    multivalued: true
  encoded_features:
    name: encoded_features
    description: All encoded features in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EncodedFeature
    multivalued: true
  features:
    name: features
    description: All features in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Feature
    multivalued: true
  proteins:
    name: proteins
    description: All proteins in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Protein
    multivalued: true
  samples:
    name: samples
    description: All samples in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Sample
    multivalued: true
  sequences:
    name: sequences
    description: All sequences in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Sequence
    multivalued: true
  experiments:
    name: experiments
    description: All experiments in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Experiment
    multivalued: true
  experiment_conditions:
    name: experiment_conditions
    description: All experiment conditions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ExperimentCondition
    multivalued: true
  experiment_condition_sets:
    name: experiment_condition_sets
    description: All experiment condition sets in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ExperimentConditionSet
    multivalued: true
  measurements:
    name: measurements
    description: All measurements in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Measurement
    multivalued: true
  measurement_sets:
    name: measurement_sets
    description: All measurement sets in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: MeasurementSet
    multivalued: true
  ordered_protocol_steps:
    name: ordered_protocol_steps
    description: All ordered protocol steps in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: OrderedProtocolStep
    multivalued: true
  parameters:
    name: parameters
    description: All parameters in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Parameter
    multivalued: true
  protocols:
    name: protocols
    description: All protocols in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Protocol
    multivalued: true
  protocol_executions:
    name: protocol_executions
    description: All protocol executions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ProtocolExecution
    multivalued: true
  protocol_inputs:
    name: protocol_inputs
    description: All protocol inputs in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ProtocolInput
    multivalued: true
  protocol_input_sets:
    name: protocol_input_sets
    description: All protocol input sets in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ProtocolInputSet
    multivalued: true
  protocol_outputs:
    name: protocol_outputs
    description: All protocol outputs in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ProtocolOutput
    multivalued: true
  protocol_steps:
    name: protocol_steps
    description: All protocol steps in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ProtocolStep
    multivalued: true
  protocol_variables:
    name: protocol_variables
    description: All protocol variables in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ProtocolVariable
    multivalued: true
  variables:
    name: variables
    description: All variables in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Variable
    multivalued: true
  variable_values:
    name: variable_values
    description: All variable values in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: VariableValue
    multivalued: true
  association_x_supporting_objects:
    name: association_x_supporting_objects
    description: All association x supporting object records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Association_x_SupportingObject
    multivalued: true
  contig_x_contig_collections:
    name: contig_x_contig_collections
    description: All contig x contig collection records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contig_x_ContigCollection
    multivalued: true
  contig_x_encoded_features:
    name: contig_x_encoded_features
    description: All contig x encoded feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contig_x_EncodedFeature
    multivalued: true
  contig_x_features:
    name: contig_x_features
    description: All contig x feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contig_x_Feature
    multivalued: true
  contig_x_proteins:
    name: contig_x_proteins
    description: All contig x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Contig_x_Protein
    multivalued: true
  contig_collection_x_encoded_features:
    name: contig_collection_x_encoded_features
    description: All contig collection x encoded feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ContigCollection_x_EncodedFeature
    multivalued: true
  contig_collection_x_features:
    name: contig_collection_x_features
    description: All contig collection x feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ContigCollection_x_Feature
    multivalued: true
  contig_collection_x_proteins:
    name: contig_collection_x_proteins
    description: All contig collection x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: ContigCollection_x_Protein
    multivalued: true
  encoded_feature_x_features:
    name: encoded_feature_x_features
    description: All encoded feature x feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EncodedFeature_x_Feature
    multivalued: true
  encoded_feature_x_proteins:
    name: encoded_feature_x_proteins
    description: All encoded feature x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: EncodedFeature_x_Protein
    multivalued: true
  feature_x_proteins:
    name: feature_x_proteins
    description: All feature x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    domain_of:
    - Schema
    range: Feature_x_Protein
    multivalued: true
tree_root: true

Induced

name: Schema
description: The root class for the CDM schema.
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
abstract: true
attributes:
  entities:
    name: entities
    description: All entities in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: entities
    owner: Schema
    domain_of:
    - Schema
    range: Entity
    multivalued: true
  names:
    name: names
    description: All names in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: names
    owner: Schema
    domain_of:
    - Schema
    range: Name
    multivalued: true
  identifiers:
    name: identifiers
    description: All identifiers in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: identifiers
    owner: Schema
    domain_of:
    - Schema
    range: Identifier
    multivalued: true
  entity_names:
    name: entity_names
    description: All name x entity records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: entity_names
    owner: Schema
    domain_of:
    - Schema
    range: EntityNames
    multivalued: true
  entity_identifiers:
    name: entity_identifiers
    description: All identifier x entity records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: entity_identifiers
    owner: Schema
    domain_of:
    - Schema
    range: EntityIdentifiers
    multivalued: true
  entity_attribute_values:
    name: entity_attribute_values
    description: All entity attribute values in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: entity_attribute_values
    owner: Schema
    domain_of:
    - Schema
    range: EntityAttributeValue
    multivalued: true
  associations:
    name: associations
    description: All associations in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: associations
    owner: Schema
    domain_of:
    - Schema
    range: Association
    multivalued: true
  clusters:
    name: clusters
    description: All clusters in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: clusters
    owner: Schema
    domain_of:
    - Schema
    range: Cluster
    multivalued: true
  cluster_members:
    name: cluster_members
    description: All cluster members in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: cluster_members
    owner: Schema
    domain_of:
    - Schema
    range: ClusterMember
    multivalued: true
  events:
    name: events
    description: All events in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: events
    owner: Schema
    domain_of:
    - Schema
    range: Event
    multivalued: true
  gold_environmental_contexts:
    name: gold_environmental_contexts
    description: All GOLD environmental contexts in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: gold_environmental_contexts
    owner: Schema
    domain_of:
    - Schema
    range: GoldEnvironmentalContext
    multivalued: true
  mixs_environmental_contexts:
    name: mixs_environmental_contexts
    description: All MIxS environmental contexts in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: mixs_environmental_contexts
    owner: Schema
    domain_of:
    - Schema
    range: MixsEnvironmentalContext
    multivalued: true
  contributors:
    name: contributors
    description: All contributors in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contributors
    owner: Schema
    domain_of:
    - Schema
    range: Contributor
    multivalued: true
  contributor_affiliations:
    name: contributor_affiliations
    description: All contributor affiliations in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contributor_affiliations
    owner: Schema
    domain_of:
    - Schema
    range: ContributorAffiliation
    multivalued: true
  contributor_x_role_x_project:
    name: contributor_x_role_x_project
    description: All contributor x role x project records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contributor_x_role_x_project
    owner: Schema
    domain_of:
    - Schema
    range: Contributor_x_Role_x_Project
    multivalued: true
  data_sources:
    name: data_sources
    description: All data sources in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: data_sources
    owner: Schema
    domain_of:
    - Schema
    range: DataSourceNew
    multivalued: true
  data_source_x_descriptions:
    name: data_source_x_descriptions
    description: All data source descriptions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: data_source_x_descriptions
    owner: Schema
    domain_of:
    - Schema
    range: DataSource_x_Description
    multivalued: true
  data_source_x_funding_references:
    name: data_source_x_funding_references
    description: All data source x funding reference records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: data_source_x_funding_references
    owner: Schema
    domain_of:
    - Schema
    range: DataSource_x_FundingReference
    multivalued: true
  data_source_x_licenses:
    name: data_source_x_licenses
    description: All data source x license records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: data_source_x_licenses
    owner: Schema
    domain_of:
    - Schema
    range: DataSource_x_License
    multivalued: true
  data_source_x_titles:
    name: data_source_x_titles
    description: All data source x title records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: data_source_x_titles
    owner: Schema
    domain_of:
    - Schema
    range: DataSource_x_Title
    multivalued: true
  funding_references:
    name: funding_references
    description: All funding references in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: funding_references
    owner: Schema
    domain_of:
    - Schema
    range: FundingReference
    multivalued: true
  licenses:
    name: licenses
    description: All licenses in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: licenses
    owner: Schema
    domain_of:
    - Schema
    range: License
    multivalued: true
  projects:
    name: projects
    description: All projects in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: projects
    owner: Schema
    domain_of:
    - Schema
    range: Project
    multivalued: true
  publications:
    name: publications
    description: All publications in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: publications
    owner: Schema
    domain_of:
    - Schema
    range: Publication
    multivalued: true
  resource_descriptions:
    name: resource_descriptions
    description: All resource descriptions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: resource_descriptions
    owner: Schema
    domain_of:
    - Schema
    range: ResourceDescription
    multivalued: true
  resource_titles:
    name: resource_titles
    description: All resource titles in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: resource_titles
    owner: Schema
    domain_of:
    - Schema
    range: ResourceTitle
    multivalued: true
  prefixes:
    name: prefixes
    description: The prefix mappings for the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: prefixes
    owner: Schema
    domain_of:
    - Schema
    range: Prefix
    multivalued: true
  statements:
    name: statements
    description: All statements in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: statements
    owner: Schema
    domain_of:
    - Schema
    range: Statement
    multivalued: true
  entailed_edges:
    name: entailed_edges
    description: All entailed edges in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: entailed_edges
    owner: Schema
    domain_of:
    - Schema
    range: EntailedEdge
    multivalued: true
  contigs:
    name: contigs
    description: All contigs in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contigs
    owner: Schema
    domain_of:
    - Schema
    range: Contig
    multivalued: true
  contig_collections:
    name: contig_collections
    description: All contig collections in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_collections
    owner: Schema
    domain_of:
    - Schema
    range: ContigCollection
    multivalued: true
  encoded_features:
    name: encoded_features
    description: All encoded features in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: encoded_features
    owner: Schema
    domain_of:
    - Schema
    range: EncodedFeature
    multivalued: true
  features:
    name: features
    description: All features in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: features
    owner: Schema
    domain_of:
    - Schema
    range: Feature
    multivalued: true
  proteins:
    name: proteins
    description: All proteins in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: proteins
    owner: Schema
    domain_of:
    - Schema
    range: Protein
    multivalued: true
  samples:
    name: samples
    description: All samples in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: samples
    owner: Schema
    domain_of:
    - Schema
    range: Sample
    multivalued: true
  sequences:
    name: sequences
    description: All sequences in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: sequences
    owner: Schema
    domain_of:
    - Schema
    range: Sequence
    multivalued: true
  experiments:
    name: experiments
    description: All experiments in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: experiments
    owner: Schema
    domain_of:
    - Schema
    range: Experiment
    multivalued: true
  experiment_conditions:
    name: experiment_conditions
    description: All experiment conditions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: experiment_conditions
    owner: Schema
    domain_of:
    - Schema
    range: ExperimentCondition
    multivalued: true
  experiment_condition_sets:
    name: experiment_condition_sets
    description: All experiment condition sets in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: experiment_condition_sets
    owner: Schema
    domain_of:
    - Schema
    range: ExperimentConditionSet
    multivalued: true
  measurements:
    name: measurements
    description: All measurements in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: measurements
    owner: Schema
    domain_of:
    - Schema
    range: Measurement
    multivalued: true
  measurement_sets:
    name: measurement_sets
    description: All measurement sets in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: measurement_sets
    owner: Schema
    domain_of:
    - Schema
    range: MeasurementSet
    multivalued: true
  ordered_protocol_steps:
    name: ordered_protocol_steps
    description: All ordered protocol steps in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: ordered_protocol_steps
    owner: Schema
    domain_of:
    - Schema
    range: OrderedProtocolStep
    multivalued: true
  parameters:
    name: parameters
    description: All parameters in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: parameters
    owner: Schema
    domain_of:
    - Schema
    range: Parameter
    multivalued: true
  protocols:
    name: protocols
    description: All protocols in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocols
    owner: Schema
    domain_of:
    - Schema
    range: Protocol
    multivalued: true
  protocol_executions:
    name: protocol_executions
    description: All protocol executions in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocol_executions
    owner: Schema
    domain_of:
    - Schema
    range: ProtocolExecution
    multivalued: true
  protocol_inputs:
    name: protocol_inputs
    description: All protocol inputs in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocol_inputs
    owner: Schema
    domain_of:
    - Schema
    range: ProtocolInput
    multivalued: true
  protocol_input_sets:
    name: protocol_input_sets
    description: All protocol input sets in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocol_input_sets
    owner: Schema
    domain_of:
    - Schema
    range: ProtocolInputSet
    multivalued: true
  protocol_outputs:
    name: protocol_outputs
    description: All protocol outputs in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocol_outputs
    owner: Schema
    domain_of:
    - Schema
    range: ProtocolOutput
    multivalued: true
  protocol_steps:
    name: protocol_steps
    description: All protocol steps in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocol_steps
    owner: Schema
    domain_of:
    - Schema
    range: ProtocolStep
    multivalued: true
  protocol_variables:
    name: protocol_variables
    description: All protocol variables in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: protocol_variables
    owner: Schema
    domain_of:
    - Schema
    range: ProtocolVariable
    multivalued: true
  variables:
    name: variables
    description: All variables in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: variables
    owner: Schema
    domain_of:
    - Schema
    range: Variable
    multivalued: true
  variable_values:
    name: variable_values
    description: All variable values in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: variable_values
    owner: Schema
    domain_of:
    - Schema
    range: VariableValue
    multivalued: true
  association_x_supporting_objects:
    name: association_x_supporting_objects
    description: All association x supporting object records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: association_x_supporting_objects
    owner: Schema
    domain_of:
    - Schema
    range: Association_x_SupportingObject
    multivalued: true
  contig_x_contig_collections:
    name: contig_x_contig_collections
    description: All contig x contig collection records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_x_contig_collections
    owner: Schema
    domain_of:
    - Schema
    range: Contig_x_ContigCollection
    multivalued: true
  contig_x_encoded_features:
    name: contig_x_encoded_features
    description: All contig x encoded feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_x_encoded_features
    owner: Schema
    domain_of:
    - Schema
    range: Contig_x_EncodedFeature
    multivalued: true
  contig_x_features:
    name: contig_x_features
    description: All contig x feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_x_features
    owner: Schema
    domain_of:
    - Schema
    range: Contig_x_Feature
    multivalued: true
  contig_x_proteins:
    name: contig_x_proteins
    description: All contig x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_x_proteins
    owner: Schema
    domain_of:
    - Schema
    range: Contig_x_Protein
    multivalued: true
  contig_collection_x_encoded_features:
    name: contig_collection_x_encoded_features
    description: All contig collection x encoded feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_collection_x_encoded_features
    owner: Schema
    domain_of:
    - Schema
    range: ContigCollection_x_EncodedFeature
    multivalued: true
  contig_collection_x_features:
    name: contig_collection_x_features
    description: All contig collection x feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_collection_x_features
    owner: Schema
    domain_of:
    - Schema
    range: ContigCollection_x_Feature
    multivalued: true
  contig_collection_x_proteins:
    name: contig_collection_x_proteins
    description: All contig collection x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: contig_collection_x_proteins
    owner: Schema
    domain_of:
    - Schema
    range: ContigCollection_x_Protein
    multivalued: true
  encoded_feature_x_features:
    name: encoded_feature_x_features
    description: All encoded feature x feature records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: encoded_feature_x_features
    owner: Schema
    domain_of:
    - Schema
    range: EncodedFeature_x_Feature
    multivalued: true
  encoded_feature_x_proteins:
    name: encoded_feature_x_proteins
    description: All encoded feature x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: encoded_feature_x_proteins
    owner: Schema
    domain_of:
    - Schema
    range: EncodedFeature_x_Protein
    multivalued: true
  feature_x_proteins:
    name: feature_x_proteins
    description: All feature x protein records in the schema.
    from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
    rank: 1000
    alias: feature_x_proteins
    owner: Schema
    domain_of:
    - Schema
    range: Feature_x_Protein
    multivalued: true
tree_root: true