Slot: checkm2_contamination
Estimate of the contamination of a contig collection (MAG or genome), estimated by CheckM2 tool
URI: cdm:checkm2_contamination Alias: checkm2_contamination
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigCollection | A set of individual, overlapping contigs that represent the complete sequence... | no |
| Genome | A contig collection with a completeness score of greater than 90% and a conta... | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | cdm:checkm2_contamination |
| native | cdm:checkm2_contamination |
LinkML Source
name: checkm2_contamination
description: Estimate of the contamination of a contig collection (MAG or genome),
estimated by CheckM2 tool
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: checkm2_contamination
owner: ContigCollection
domain_of:
- ContigCollection
range: float