Slot: checkm2_contamination
Estimate of the contamination of a contigset (MAG or genome), estimated by CheckM2 tool
URI: kb_cdm:checkm2_contamination
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Genome | A contigset with a completeness score of greater than 90% and a contamination... | no |
| Contigset | A set of individual, overlapping contigs that represent the complete sequence... | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:checkm2_contamination |
| native | kb_cdm:checkm2_contamination |
LinkML Source
name: checkm2_contamination
description: Estimate of the contamination of a contigset (MAG or genome), estimated
by CheckM2 tool
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: checkm2_contamination
owner: Contigset
domain_of:
- Contigset
range: float