Slot: contig_id
Internal (CDM) unique identifier for a contig.
From the Entity table: entity_id where entity_type == 'Contig'.
__
URI: kb_cdm:contig_id Alias: contig_id
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigXFeature | Captures the relationship between a contig and a feature; equivalent to feature part-of contig. | no |
| ContigXEncodedFeature | Captures the relationship between a contig and an encoded feature. | no |
| ContigXProtein | Captures the relationship between a contig and a protein; equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512) contig. | no |
| Contig | A contig (derived from the word "contiguous") is a set of DNA segments or sequences that overlap in a way that provides a contiguous representation of a genomic region. A contig should not contain any gaps. | yes |
| ContigXContigCollection | Captures the relationship between a contig and a contig collection; equivalent to contig part-of contig collection. | yes |
Properties
-
Range: CdmContigId
-
Required: True
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:contig_id |
| native | kb_cdm:contig_id |
LinkML Source
name: contig_id
description: 'Internal (CDM) unique identifier for a contig.
From the Entity table: entity_id where entity_type == ''Contig''.
'
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
rank: 1000
alias: contig_id
domain_of:
- Contig
- Contig_x_ContigCollection
- Contig_x_EncodedFeature
- Contig_x_Feature
- Contig_x_Protein
range: cdm_contig_id
required: true