Skip to content

Slot: contig_n50

Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of contig collection size

URI: kb_cdm:contig_n50 Alias: contig_n50

Applicable Classes

Name Description Modifies Slot
ContigCollection A set of individual, overlapping contigs that represent the complete sequenced genome of an organism. no

Properties

Aliases

  • ctg_N50
  • contig_N50

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:contig_n50
native kb_cdm:contig_n50

LinkML Source

name: contig_n50
description: Given a set of contigs, each with its own length, the N50 count is defined
  as the smallest number_of_contigs whose length sum makes up half of contig collection
  size
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
aliases:
- ctg_N50
- contig_N50
rank: 1000
alias: contig_n50
owner: ContigCollection
domain_of:
- ContigCollection
range: integer