Slot: ctg_L50
Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total contigset length
URI: kb_cdm:ctg_L50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Genome | A contigset with a completeness score of greater than 90% and a contamination... | no |
| Contigset | A set of individual, overlapping contigs that represent the complete sequence... | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:ctg_L50 |
| native | kb_cdm:ctg_L50 |
LinkML Source
name: ctg_L50
description: Given a set of contigs, the L50 is defined as the sequence length of
the shortest contig at 50% of the total contigset length
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: ctg_L50
owner: Contigset
domain_of:
- Contigset
range: integer