Slot: ctg_N50
Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of contigset size
URI: kb_cdm:ctg_N50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Genome | A contigset with a completeness score of greater than 90% and a contamination... | no |
| Contigset | A set of individual, overlapping contigs that represent the complete sequence... | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:ctg_N50 |
| native | kb_cdm:ctg_N50 |
LinkML Source
name: ctg_N50
description: Given a set of contigs, each with its own length, the N50 count is defined
as the smallest number_of_contigs whose length sum makes up half of contigset size
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: ctg_N50
owner: Contigset
domain_of:
- Contigset
range: integer