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Slot: ctg_N50

Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of contig collection size

URI: cdm:ctg_N50 Alias: ctg_N50

Applicable Classes

Name Description Modifies Slot
ContigCollection A set of individual, overlapping contigs that represent the complete sequence... no
Genome A contig collection with a completeness score of greater than 90% and a conta... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self cdm:ctg_N50
native cdm:ctg_N50

LinkML Source

name: ctg_N50
description: Given a set of contigs, each with its own length, the N50 count is defined
  as the smallest number_of_contigs whose length sum makes up half of contig collection
  size
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: ctg_N50
owner: ContigCollection
domain_of:
- ContigCollection
range: integer