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Slot: end

The start and end coordinates of the feature are given in positive 1-based int coordinates, relative to the landmark given in column one. Start is always less than or equal to end. For features that cross the origin of a circular feature (e.g. most bacterial genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. For zero-length features, such as insertion sites, start equals end and the implied site is to the right of the indicated base in the direction of the landmark.

URI: kb_cdm:end

Applicable Classes

Name Description Modifies Slot
Feature A feature localized to an interval along a contig no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self kb_cdm:end
native kb_cdm:end

LinkML Source

name: end
description: The start and end coordinates of the feature are given in positive 1-based
  int coordinates, relative to the landmark given in column one. Start is always less
  than or equal to end. For features that cross the origin of a circular feature (e.g.
  most bacterial genomes, plasmids, and some viral genomes), the requirement for start
  to be less than or equal to end is satisfied by making end = the position of the
  end + the length of the landmark feature. For zero-length features, such as insertion
  sites, start equals end and the implied site is to the right of the indicated base
  in the direction of the landmark.
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: end
owner: Feature
domain_of:
- Feature
range: integer