Slot: end
The start and end coordinates of the feature are given in positive 1-based int coordinates, relative to the landmark given in column one. Start is always less than or equal to end. For features that cross the origin of a circular feature (e.g. most bacterial genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. For zero-length features, such as insertion sites, start equals end and the implied site is to the right of the indicated base in the direction of the landmark.
URI: kb_cdm:end
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
Feature | A feature localized to an interval along a contig | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | kb_cdm:end |
native | kb_cdm:end |
LinkML Source
name: end
description: The start and end coordinates of the feature are given in positive 1-based
int coordinates, relative to the landmark given in column one. Start is always less
than or equal to end. For features that cross the origin of a circular feature (e.g.
most bacterial genomes, plasmids, and some viral genomes), the requirement for start
to be less than or equal to end is satisfied by making end = the position of the
end + the length of the landmark feature. For zero-length features, such as insertion
sites, start equals end and the implied site is to the right of the indicated base
in the direction of the landmark.
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: end
owner: Feature
domain_of:
- Feature
range: integer