Slot: broad-scale environmental context (env_broad_scale)

Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO's biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS

URI: mixs:0000012 Alias: env_broad_scale

Applicable Classes

Name	Description	Modifies Slot
MixsEnvironmentalContext	Environmental context, described using the MiXS convention of broad and local...	no

Properties

Range: Uriorcurie

Aliases

broad-scale environmental context

Examples

Value
oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean

Identifier and Mapping Information

Annotations

property	value
expected_value	The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes.
tooltip	The biome or major environmental system where the sample or specimen originated. Choose values from subclasses of the 'biome' class [ENVO:00000428] in the Environment Ontology (ENVO). For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to describe the broad anatomical or morphological context

Schema Source

from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type	Mapped Value
self	mixs:0000012
native	cdm:env_broad_scale

LinkML Source

name: env_broad_scale
annotations:
  expected_value:
    tag: expected_value
    value: The major environment type(s) where the sample was collected. Recommend
      subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one
      or more pipes.
  tooltip:
    tag: tooltip
    value: The biome or major environmental system where the sample or specimen originated.
      Choose values from subclasses of the 'biome' class [ENVO:00000428] in the Environment
      Ontology (ENVO). For host-associated or plant-associated samples, use terms
      from the UBERON or Plant Ontology to describe the broad anatomical or morphological
      context
description: 'Report the major environmental system the sample or specimen came from.
  The system(s) identified should have a coarse spatial grain, to provide the general
  environmental context of where the sampling was done (e.g. in the desert or a rainforest).
  We recommend using subclasses of EnvO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
  EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
examples:
- value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample
    from the photic zone in middle of the Atlantic Ocean
from_schema: https://github.com/kbase/cdm-schema
aliases:
- broad-scale environmental context
rank: 1000
string_serialization: '{termLabel} {[termID]}'
slot_uri: mixs:0000012
alias: env_broad_scale
owner: MixsEnvironmentalContext
domain_of:
- MixsEnvironmentalContext
range: uriorcurie
multivalued: false