Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO's biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean
Identifier and Mapping Information
Annotations
property
value
expected_value
The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes.
Schema Source
from schema: https://github.com/kbase/cdm-schema
Mappings
Mapping Type
Mapped Value
self
MIXS:0000012
native
kb_cdm:env_broad_scale
LinkML Source
name: env_broad_scale
annotations:
expected_value:
tag: expected_value
value: The major environment type(s) where the sample was collected. Recommend
subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one
or more pipes.
tooltip:
tag: tooltip
value: The biome or major environmental system where the sample or specimen originated.
Choose values from subclasses of the 'biome' class [ENVO:00000428] in the Environment
Ontology (ENVO). For host-associated or plant-associated samples, use terms
from the UBERON or Plant Ontology to describe the broad anatomical or morphological
context
description: 'Report the major environmental system the sample or specimen came from.
The system(s) identified should have a coarse spatial grain, to provide the general
environmental context of where the sampling was done (e.g. in the desert or a rainforest).
We recommend using subclasses of EnvO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
examples:
- value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample
from the photic zone in middle of the Atlantic Ocean
from_schema: https://github.com/kbase/cdm-schema
aliases:
- broad-scale environmental context
rank: 1000
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
alias: env_broad_scale
owner: MixsEnvironmentalContext
domain_of:
- MixsEnvironmentalContext
range: uriorcurie
multivalued: false