Slot: protein_id
Internal (CDM) unique identifier for a protein.
From the Entity table: entity_id where entity_type == 'Protein'.
__
URI: kb_cdm:protein_id Alias: protein_id
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Protein | Proteins are large, complex molecules made up of one or more long, folded chains of amino acids, whose sequences are determined by the DNA sequence of the protein-encoding gene. | yes |
| FeatureXProtein | Captures the relationship between a feature and a protein; equivalent to feature encodes protein. | yes |
| EncodedFeatureXProtein | Captures the relationship between an encoded feature (RNA of some sort) and a protein. | no |
| ContigXProtein | Captures the relationship between a contig and a protein; equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512) contig. | yes |
| ContigCollectionXProtein | Captures the relationship between a contig collection and a protein; equivalent to protein is ribosomal translation of (http://purl.obolibrary.org/obo/RO_0002512) contig collection. | yes |
Properties
-
Range: CdmProteinId
-
Required: True
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:protein_id |
| native | kb_cdm:protein_id |
LinkML Source
name: protein_id
description: 'Internal (CDM) unique identifier for a protein.
From the Entity table: entity_id where entity_type == ''Protein''.
'
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
rank: 1000
alias: protein_id
domain_of:
- Protein
- Contig_x_Protein
- ContigCollection_x_Protein
- EncodedFeature_x_Protein
- Feature_x_Protein
range: cdm_protein_id
required: true