Slot: scaf_L50
Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total contig collection length
URI: cdm:scaf_L50 Alias: scaf_L50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigCollection | A set of individual, overlapping contigs that represent the complete sequence... | no |
| Genome | A contig collection with a completeness score of greater than 90% and a conta... | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | cdm:scaf_L50 |
| native | cdm:scaf_L50 |
LinkML Source
name: scaf_L50
description: Given a set of scaffolds, the L50 is defined as the sequence length of
the shortest scaffold at 50% of the total contig collection length
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: scaf_L50
owner: ContigCollection
domain_of:
- ContigCollection
range: integer