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Slot: scaf_N50

Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of contig collection size

URI: kb_cdm:scaf_N50 Alias: scaf_N50

Applicable Classes

Name Description Modifies Slot
ContigCollection A set of individual, overlapping contigs that represent the complete sequence... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:scaf_N50
native kb_cdm:scaf_N50

LinkML Source

name: scaf_N50
description: Given a set of scaffolds, each with its own length, the N50 count is
  defined as the smallest number of scaffolds whose length sum makes up half of contig
  collection size
from_schema: http://kbase.github.io/cdm-schema/cdm_schema
rank: 1000
alias: scaf_N50
owner: ContigCollection
domain_of:
- ContigCollection
range: integer