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Slot: scaf_N90

Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of contig collection size

URI: cdm:scaf_N90 Alias: scaf_N90

Applicable Classes

Name Description Modifies Slot
ContigCollection A set of individual, overlapping contigs that represent the complete sequence... no
Genome A contig collection with a completeness score of greater than 90% and a conta... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self cdm:scaf_N90
native cdm:scaf_N90

LinkML Source

name: scaf_N90
description: Given a set of scaffolds, each with its own length, the N90 count is
  defined as the smallest number of scaffolds whose length sum makes up 90% of contig
  collection size
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: scaf_N90
owner: ContigCollection
domain_of:
- ContigCollection
range: integer