Slot: scaf_N90
Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of contigset size
URI: kb_cdm:scaf_N90
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Genome | A contigset with a completeness score of greater than 90% and a contamination... | no |
| Contigset | A set of individual, overlapping contigs that represent the complete sequence... | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:scaf_N90 |
| native | kb_cdm:scaf_N90 |
LinkML Source
name: scaf_N90
description: Given a set of scaffolds, each with its own length, the N90 count is
defined as the smallest number of scaffolds whose length sum makes up 90% of contigset
size
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: scaf_N90
owner: Contigset
domain_of:
- Contigset
range: integer