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Slot: scaf_logsum

The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase

URI: cdm:scaf_logsum Alias: scaf_logsum

Applicable Classes

Name Description Modifies Slot
ContigCollection A set of individual, overlapping contigs that represent the complete sequence... no
Genome A contig collection with a completeness score of greater than 90% and a conta... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/kbase/cdm-schema

Mappings

Mapping Type Mapped Value
self cdm:scaf_logsum
native cdm:scaf_logsum

LinkML Source

name: scaf_logsum
description: The sum of the (length*log(length)) of all scaffolds, times some constant.
  Increase the contiguity, the score will increase
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: scaf_logsum
owner: ContigCollection
domain_of:
- ContigCollection
range: float