Slot: scaf_logsum
The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase
URI: kb_cdm:scaf_logsum
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Genome | A contigset with a completeness score of greater than 90% and a contamination... | no |
| Contigset | A set of individual, overlapping contigs that represent the complete sequence... | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/kbase/cdm-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:scaf_logsum |
| native | kb_cdm:scaf_logsum |
LinkML Source
name: scaf_logsum
description: The sum of the (length*log(length)) of all scaffolds, times some constant.
Increase the contiguity, the score will increase
from_schema: https://github.com/kbase/cdm-schema
rank: 1000
alias: scaf_logsum
owner: Contigset
domain_of:
- Contigset
range: float