Slot: scaffold_l50
Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total contig collection length
URI: kb_cdm:scaffold_l50 Alias: scaffold_l50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigCollection | A set of individual, overlapping contigs that represent the complete sequenced genome of an organism. | no |
Properties
- Range: Integer
Aliases
- scaf_L50
- scaffold_L50
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:scaffold_l50 |
| native | kb_cdm:scaffold_l50 |
LinkML Source
name: scaffold_l50
description: Given a set of scaffolds, the L50 is defined as the sequence length of
the shortest scaffold at 50% of the total contig collection length
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
aliases:
- scaf_L50
- scaffold_L50
rank: 1000
alias: scaffold_l50
owner: ContigCollection
domain_of:
- ContigCollection
range: integer