Slot: scaffold_logsum
The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase
URI: kb_cdm:scaffold_logsum Alias: scaffold_logsum
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigCollection | A set of individual, overlapping contigs that represent the complete sequenced genome of an organism. | no |
Properties
- Range: Float
Aliases
- scaf_logsum
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:scaffold_logsum |
| native | kb_cdm:scaffold_logsum |
LinkML Source
name: scaffold_logsum
description: The sum of the (length*log(length)) of all scaffolds, times some constant.
Increase the contiguity, the score will increase
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
aliases:
- scaf_logsum
rank: 1000
alias: scaffold_logsum
owner: ContigCollection
domain_of:
- ContigCollection
range: float