Slot: scaffold_n50
Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of contig collection size
URI: kb_cdm:scaffold_n50 Alias: scaffold_n50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigCollection | A set of individual, overlapping contigs that represent the complete sequenced genome of an organism. | no |
Properties
- Range: Integer
Aliases
- scaf_N50
- scaffold_N50
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:scaffold_n50 |
| native | kb_cdm:scaffold_n50 |
LinkML Source
name: scaffold_n50
description: Given a set of scaffolds, each with its own length, the N50 count is
defined as the smallest number of scaffolds whose length sum makes up half of contig
collection size
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
aliases:
- scaf_N50
- scaffold_N50
rank: 1000
alias: scaffold_n50
owner: ContigCollection
domain_of:
- ContigCollection
range: integer