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Slot: scaffold_n90

Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of contig collection size

URI: kb_cdm:scaffold_n90 Alias: scaffold_n90

Applicable Classes

Name Description Modifies Slot
ContigCollection A set of individual, overlapping contigs that represent the complete sequenced genome of an organism. no

Properties

Aliases

  • scaf_N90
  • scaffold_N90

Identifier and Mapping Information

Schema Source

  • from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema

Mappings

Mapping Type Mapped Value
self kb_cdm:scaffold_n90
native kb_cdm:scaffold_n90

LinkML Source

name: scaffold_n90
description: Given a set of scaffolds, each with its own length, the N90 count is
  defined as the smallest number of scaffolds whose length sum makes up 90% of contig
  collection size
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
aliases:
- scaf_N90
- scaffold_N90
rank: 1000
alias: scaffold_n90
owner: ContigCollection
domain_of:
- ContigCollection
range: integer