Slot: scaffold_powersum
Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25).
URI: kb_cdm:scaffold_powersum Alias: scaffold_powersum
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ContigCollection | A set of individual, overlapping contigs that represent the complete sequenced genome of an organism. | no |
Properties
- Range: Float
Aliases
- scaf_powsum
- scaffold_powsum
Identifier and Mapping Information
Schema Source
- from schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kb_cdm:scaffold_powersum |
| native | kb_cdm:scaffold_powersum |
LinkML Source
name: scaffold_powersum
description: Powersum of all scaffolds is the same as logsum except that it uses the
sum of (length*(length^P)) for some power P (default P=0.25).
from_schema: http://kbase.github.io/cdm-schema/linkml/cdm_schema
aliases:
- scaf_powsum
- scaffold_powsum
rank: 1000
alias: scaffold_powersum
owner: ContigCollection
domain_of:
- ContigCollection
range: float