KBase FAIR Narratives
Generated on 2025-03-18
| DOI | Title, Authors | Published | Updated |
|---|---|---|---|
| 10.25982/175980.54/2520041 | General Biology 2 Sugar Beet Lab - Spring 24 Schirmer A, Parikh K |
2025 | 2025-02-21T03:37:31Z |
| 10.25982/165213.26/2519695 | RWRtoolkit Narrative Kainer D, Lane M, Sullivan K, Miller J, Cashman M, Morgan M, Cliff A, Romero J, Walker A, Blair D, Chhetri H, Wang Y, Pavicic M, Furches A, Noshay J, Drake M, Landry N, Ireland A, Missaoui A, Kang Y, Sedbrook J, Dehal P, Canon S, Jacobson D |
2024 | 2025-02-20T03:37:28Z |
| 10.25982/159671.262/2496635 | Linking soil microbial genomic features to forest-to-pasture conversion in the Amazon Venturini A |
2025 | 2025-01-08T03:29:06Z |
| 10.25982/130563.7/2480634 | KBase Narrative - Draft Genome of Roseomonas Strain GC11 Cooper J, Dolezal K |
2024 | 2024-12-12T03:16:32Z |
| 10.25982/124597.8/2480633 | KBase Narrative - Draft Genome of Exiguobacterium indicum strain LL15 Cooper J, Redman E |
2024 | 2024-12-12T03:16:31Z |
| 10.25982/193023.110/2479104 | KBase Narrative - Complete genome sequence of a novel Microbacterium sp. strain Clip185. Mitra M, Stanescu A |
2024 | 2024-12-05T03:11:27Z |
| 10.25982/166913.44/2476642 | KBase Narrative - van den Bergh et al Rocha G, Van Den Bergh S |
2024 | 2024-11-12T03:08:25Z |
| 10.25982/197146.10/2475943 | RNA-Seq analysis of nine tRNA-Modification deficient mutants in E. coli De Crécy-Lagard V, Babor J, Bacusmo J, Dedon P |
2024 | 2024-11-08T03:13:34Z |
| 10.25982/185119.92/2404572 | Luteolibacter sp. strain Populi Allen B, Podar M |
2024 | 2024-07-20T02:10:04Z |
| 10.25982/186528.9/2404396 | KBase Narrative - Genomes of nine cultured microbes from two hydrologically connected freshwater sites in Wellesley MA Biller S |
2024 | 2024-08-16T02:05:47Z |
| 10.25982/157793.280/2368552 | KBase Narrative - 13 draft genomes of Bacillus from HLB-impacted citrus trees Vieira F, Blacutt A, Drozd C, Viravathana P, Ginnan N, Roper C |
2024 | 2024-10-24T08:55:21Z |
| 10.25982/169030.42/2345706 | KBase Narrative - Methylobacterium fujisawaense Strain C14 Genomic Sequence Kiledal E, Moxley I, Shevchenko O, Goff J, Maresca J |
2024 | 2024-06-14T02:12:57Z |
| 10.25982/179975.10/2345704 | KBase Narrative - Genome sequences of four bacterial strains isolated from organofluorine enrichment cultures Goff J, Hahn C, Ingrassia R, Tiyapun C, Waldschmidt G, Moxley I, Smith E, Marini M, Shevchenko O, Maresca J |
2024 | 2024-05-07T02:09:20Z |
| 10.25982/138721.208/2336591 | KBase Narrative - Timberlake Metagenomes De Mesquita C, Ciapina W, Ardón M, Tringe S |
2024 | 2024-04-13T02:43:09Z |
| 10.25982/157568.747/2335480 | KBase Narrative - Metabolic_reconstruction_ETDI_mangrove Laux M, Ciapina L, Carvalho F, Vasconcelos A |
2024 | 2024-04-11T18:04:44Z |
| 10.25982/175564.2/2329279 | KBase Narrative - StRoNG Net Part 2: Genome Analysis - Student - Static Schirmer A |
2024 | 2024-03-29T02:47:22Z |
| 10.25982/175568.4/2329277 | KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy Schirmer A, Whitham J |
2024 | 2024-03-29T02:47:18Z |
| 10.25982/90888.1452/2327015 | KBase Narrative - Atacama Trench & Sn Clemente 2018 cruise Metagenomes -Sequence quality filtration & Assembly- Plominsky A |
2024 | 2024-03-26T02:48:12Z |
| 10.25982/138628.97/2327013 | KBase Narrative - Atacama Trench & Sn Clemente 2018 cruise Metagenomes -Decontamination through Metagenomic Fractionation and analysis of Metabolic Potential- Plominsky A |
2024 | 2024-03-26T02:48:27Z |
| 10.25982/174276.9/2324582 | KBase Narrative - Formation of a constructed microbial community in a nutrient rich environment indicates bacterial interspecific competition Wang J, Appidi M, Burdick L, Abraham P, Hettich R, Pelletier D, Doktycz M |
2024 | 2024-03-19T02:32:10Z |
| 10.25982/95510.53/2310383 | KBase Narrative - C. roseus Tissue Specificity Analysis using Góngora-Castillo Transcripts and Franke v2 Genome Cole-Osborn L, MCCallan S, Prifti O, Abu R, Sjoelund V, Lee-Parsons C |
2022 | 2024-05-18T21:51:46Z |
| 10.25982/171033.8/2309719 | KBase Narrative - Lachnospiraceae sp. C1.1 genome Hackmann T, Zhang B |
2024 | 2024-03-21T14:17:44Z |
| 10.25982/171029.13/2309718 | KBase Narrative - Porphyromonadaceae sp. W3.11 genome Hackmann T, Zhang B |
2024 | 2024-03-21T14:17:41Z |
| 10.25982/135835.33/2203552 | KBase Narrative - Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed site Szink E, Goff J, Durrence K, Lui L, Nielsen T, Kuehl J, Hunt K, Chandonia J, Thorgersen M, Poole F, Stahl D, Chakraborty R, Arkin A, Adams M |
2023 | 2024-05-07T02:10:50Z |
| 10.25982/152701.14/1996997 | Five draft genome assemblies from Bacillaceae isolated from a degraded wetland environment McLoon A, Asante P, Anderson T, Cochrane D, Cohen K, German J, Hrubes C, LaCroix I, McNamee K, Nichter A, Pepe J, Schofield A |
2023 | 2023-12-15T03:07:07Z |
| 10.25982/174276.9/2324582 | KBase Narrative - Formation of a constructed microbial community in a nutrient rich environment indicates bacterial interspecific competition Wang J, Appidi M, Burdick L, Abraham P, Hettich R, Pelletier D, Doktycz M |
2024 | 2024-03-19T02:32:10Z |
| 10.25982/1764746 | KBase partners with community developers from several Department of Energy Science Focus Areas to increase functionality of tools and analysis Wood-Charlson E, Drake M |
2021 | 2024-03-07T03:12:25Z |
| 10.25982/1608940 | Make the Most Out of Genome Announcements with KBase Allen B, Land M, Wood-Charlson E |
2020 | 2024-03-07T03:12:18Z |
| 10.25982/1984203 | KBase Credit Metadata Schema Ireland A, Wood-Charlson E |
2023 | 2024-03-01T03:07:23Z |
| 10.25982/152701.14/1996997 | Five draft genome assemblies from Bacillaceae isolated from a degraded wetland environment McLoon A, Asante P, Anderson T, Cochrane D, Cohen K, German J, Hrubes C, LaCroix I, McNamee K, Nichter A, Pepe J, Schofield A |
2023 | 2023-12-15T03:07:07Z |
| 10.25982/161632.357/2228677 | KBase Narrative - Complete Genome Sequence of Acidovorax temperans strain LMJ Mitra M, Stanescu A |
2023 | 2023-12-07T03:38:06Z |
| 10.25982/163445.15/2223098 | Metabacillus indicus EGFCL74 Lopez C, Garcia-Fuentes E |
2023 | 2023-12-02T03:22:28Z |
| 10.25982/1668075 | KBase Educators Overview Dow E |
2020 | 2023-12-02T03:08:48Z |
| 10.25982/160429.7/2203457 | KBase Narrative - Supplemental Data for "Mixed waste contamination selects for a mobile genetic element population enriched in multiple heavy metal resistance genes" Goff J, Lui L, Nielsen T, Poole F, Smith H, Walker K, Hazen T, Fields M, Arkin A, Adams M |
2023 | 2023-11-24T08:55:09Z |
| 10.25982/86723.65/1778009 | Gulf of Mexico blue hole harbors high levels of novel microbial lineages Patin N |
2021 | 2023-09-27T02:04:35Z |
| 10.25982/109073.30/1895615 | GROWdb US River Systems - Samples Borton M, Wrighton K, Sadkhin B, Henry C, Wood-Charlson E, Liu F, Edirisinghe J, Faria J, Cannon S |
2022 | 2023-08-30T02:36:21Z |
| 10.25982/116951.133/1878567 | KBase Narrative - Metagenome-assembled genomes from Amazonian soil microbial consortia Mandro J |
2022 | 2023-08-23T02:21:44Z |
| 10.25982/77705.1341/1779218 | Impact of BBDuk metagenomic read trimming and decontamination Whitham J |
2021 | 2023-07-29T08:55:18Z |
| 10.25982/68579.143/1766297 | KBase Silver Case Study: Determining Media Formulation Requirements for Isolation of Microbiome Constituents Whitham J |
2021 | 2023-07-29T08:55:08Z |
| 10.25982/62657.1515/1779219 | JGI QC impact on assembly, binning, phylogenomics, and functional analysis Whitham J |
2021 | 2023-07-28T08:55:08Z |
| 10.25982/147325.113/1987691 | KBase Narrative - MRA Genome Announcement Bradyrhizobium NP1 Morrow M, DeAngelis K, Fisher T, Durmazolu F |
2023 | 2023-07-01T03:49:33Z |
| 10.25982/95771.20/1828591 | The moderately defficient enzyme: Catalysis-related damage in vivo and its repair Henry C, Wilson M, Hanson A, Abraham, , Leong B, McCarty D, Bathe U |
2021 | 2023-05-17T02:10:48Z |
| 10.25982/63776.53/1637360 | Isolate genomes from "Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance" Kothari A, Roux S, Zhang H, Prieto A, Chandonia J, Spencer S, Wu X, Deutschbauer A, Arkin A, Alm E, Chakraborty R, Mukhopadhyay A |
2020 | 2023-05-17T02:08:44Z |
| 10.25982/135473.103/1960315 | KBase Narrative - SOMATA - Motivating Example Cashman M, Marsh A, Cottingham B, Cohen M |
2023 | 2023-03-09T03:20:34Z |
| 10.25982/106247.14/1924621 | KBase Narrative - natrialba Rodge S |
2023 | 2023-02-22T03:14:24Z |
| 10.25982/130581.14/1897514 | KBase Narrative - O'Toole et al Citricoccus MRA Genome Announcement Analysis Narrative McGivern B, O'Toole P, Wrighton K |
2022 | 2023-01-25T08:56:10Z |
| 10.25982/1909690 | KBase Educators Handbook Dow E, Wood-Charlson E |
2022 | 2023-01-19T03:22:30Z |
| 10.25982/88325.84/1855758 | DRAM example narrative Shaffer M |
2021 | 2022-12-14T03:08:55Z |
| 10.25982/133260.12/1901826 | KBase Narrative - BIT 295 MRA Isolate 106- Final Chadha A, Goller C, Sjogren C, Stanek R, Goeuriot S |
2022 | 2022-12-06T03:37:16Z |
| 10.25982/62384.253/1831503 | Moab Desert Crust - Sample 4E Chivian D, Jungbluth S, Dehal P, Wood-Charlson E, Canon R, Allen B, Clark M, Gu T, Land M, Price G, Riehl W, Sneddon M, Sutormin R, Zhang Q, Cottingham R, Henry C, Arkin A |
2021 | 2022-12-01T08:55:47Z |
| 10.25982/103341.23/1893106 | KBase Narrative - kb_DRAM E. coli annotation Shaffer M |
2022 | 2022-10-18T02:18:58Z |
| 10.25982/128174.5/1893104 | KBase Narrative - kb_DRAM P. normanii annotation with model Flynn R, Faria J |
2022 | 2022-10-18T02:18:55Z |
| 10.25982/116829.47/1887425 | KBase Narrative - Mse_Genome_Assembly Rastegar K |
2022 | 2022-09-16T02:37:23Z |
| 10.25982/122484.28/1877390 | Siena College 2022 MRA Genome Announcement Narrative - 6 Isolates McLoon A, Awad T, Bogardus M, Buono M, Devine K, Draper R, Femenella B, Gallagher H, Morelock L, Razi M, Rennick J, Sheridan A, Thibault R, Touchette K, Zuchowski G |
2022 | 2022-08-24T02:14:49Z |
| 10.25982/123676.7/1880128 | KBase Narrative - Comparing Proteomes of Cupriavidus basilensis 4G11 and Cupriavidus necator H16 Sander K, Abel A, Friedline S, Sharpless W, Skerker J, Deutschbauer A, Clark D, Arkin A |
2022 | 2022-08-10T02:30:36Z |
| 10.25982/91640.61/1870603 | KBase Narrative - Genome-resolved metagenomics reveals novel archaeal and bacterial genomes from Amazonian forest and pasture soils Venturini A, Gontijo J, Mandro J, Paula F, Yoshiura C, DaFrança A |
2022 | 2022-07-29T02:13:55Z |
| 10.25982/57422.59/1778919 | Análisis de la secuencia de un aislamiento de coronavirus Covid-19 Costa D, Valenzuela S |
2020 | 2022-06-02T02:07:25Z |
| 10.25982/75811.86/1868934 | KBase Narrative - Viral Analysis End-to-End Bolduc B |
2022 | 2022-05-25T21:01:39Z |
| 10.25982/113717.182/1864845 | Metagenomes from Eastern Brazilian Amazonian floodplains in the wet and dry seasons Gontijo J, Venturini A, Da França A, Moura J, Nüsslein K, Bohannan B, Rodrigues J, Tsai S |
2022 | 2022-05-25T21:01:28Z |
| 10.25982/112150.61/1863566 | Geochemical and sequencing data from Goff et. al. 2022 Goff J, Putt A, Fan Y, Michael J, Wang Y, Ning D, Fu Y, Van Nostrand J, Chandonia J, Hazen T, Zhou J, Arkin A, Adams M |
2022 | 2022-05-25T21:01:26Z |
| 10.25982/71260.262/1827108 | Omics-to-Reactive-Transport (ORT): A workflow linking genome-scale metabolic models with reactive transport codes Rubinstein R, Borton M, Zhou H, Shaffer M, Hoyt D, Stegen J, Henry C, Wrighton K, Versteeg R |
2021 | 2022-05-25T20:59:41Z |
| 10.25982/26409.220/1820944 | Conditional Filamentation of Paraburkholderia elongata 5N - Data Container Wilhelm R |
2021 | 2022-05-25T20:59:22Z |
| 10.25982/97146.7/1817654 | Narrative for Bioproject PRJNA623111 Buongiorno J |
2021 | 2022-05-25T20:59:15Z |
| 10.25982/51640.53/1808273 | Grant_Staphylococcus_succinus Nickolson G, Marshall C, Balasjin N, Bridwell S |
2021 | 2022-05-25T20:58:47Z |
| 10.25982/58799.728/1798340 | Osur_paper Kiefer J |
2021 | 2022-05-25T20:58:29Z |
| 10.25982/90997.49/1783189 | Bioinformatic teaching resources - for educators, by educators - using KBase, a free, user-friendly, open source platform Dow E, Wood-Charlson E, Biller S, Paustian T, Schimer A, Sheik C, Whitham J, Krebs R, Goller C, Allen B, Crockett Z, Arkin A |
2021 | 2022-05-25T20:58:15Z |
| 10.25982/69990.6/1778232 | Leisingera sp. ANG59 & Pseudoalteromonas sp. JC28 Genomes Overview Suria A |
2020 | 2022-05-25T20:57:51Z |
| 10.25982/73218.75/1777998 | Community Modeling and Flux Balance Analysis of Synthetic Bacterial Community in MOPS Medium Wang J |
2021 | 2022-05-25T20:57:46Z |
| 10.25982/73221.117/1777993 | Community Modeling and Flux Balance Analysis of Synthetic Bacterial Community in R2A Medium Wang J |
2021 | 2022-05-25T20:57:44Z |
| 10.25982/67335.259/1773074 | Case Study: Can you find Delftia? Krebs R, Goller C |
2020 | 2022-05-25T20:57:36Z |
| 10.25982/65526.69/1755438 | Substrate-explicit Modeling Tutorial Song H, Lee J |
2020 | 2022-05-25T20:57:02Z |
| 10.25982/1722943 | 2020 Multiscale Microbial Dynamics Modeling Course Dow E, Wood-Charlson E, Hess N, Scheibe T |
2020 | 2022-05-25T20:56:32Z |
| 10.25982/53247.64/1670777 | A Genomic Catalogue of Earth’s Microbiomes - Introductory KBase Narrative Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, Wu D, Paez-Espino D, Chen I, Huntemann M, Palaniappan K, Ladau J, Mukherjee S, Reddy T, Nielsen T, Kirton E, P. Faria J, N. Edirisinghe J, S. Henry C, P. Jungbluth S, Chivian D, Dehal P, M. Wood-Charlson E, P. Arkin A, Tringe S, Visel A, Woyke T, J. Mouncey N, N. Ivanova N, C. Kyrpides N, Eloe-Fadrosh E |
2020 | 2022-05-25T20:55:15Z |
| 10.25982/69195.32/1647032 | Avocado_Bark_Diversity Aguirre Von Wobeser E, Alfonso-Sánchez A, Méndez-Bravo A, Reverchon F |
2020 | 2022-05-25T20:51:04Z |
| 10.25982/51077.6/1637903 | Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions St. James A |
2020 | 2022-05-25T20:50:52Z |
| 10.25982/56021.26/1637512 | Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere Podar M |
2020 | 2022-05-25T20:50:49Z |
| 10.25982/55377.22/1637507 | Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides Podar M |
2020 | 2022-05-25T20:50:47Z |
| 10.25982/54100.27/1635639 | Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots Pelletier D |
2020 | 2022-05-25T20:50:44Z |
| 10.25982/59912.37/1635154 | Viral Annotation Pipeline in KBase Bolduc B, Wood-Charlson E, Dehal P, Crockett Z |
2020 | 2022-05-25T20:50:39Z |
| 10.25982/105874.55/1844990 | Complete Genome of ORR Isolate Bacillus cereus CPT56D-587-MTF Goff J |
2022 | 2022-05-03T02:08:21Z |
| 10.25982/101788.79/1828290 | A KBase Case Study on Genome-wide Transcriptomics and Plant Primary Metabolism in Sorghum Kumari S |
2021 | 2021-12-16T03:30:34Z |
| 10.25982/44746.21/1635640 | Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere Podar M |
2020 | 2021-09-29T03:16:39Z |