Bundled Schemas & XSD Assets¶

Static non-Python schema assets bundled inside src/cdm_data_loaders/schemas/ for validation and PyArrow schema generation. Select any schema path to open its syntax-highlighted source page.

Relative Path (`src/cdm_data_loaders/`)	Format	Schema Group	Source
`schemas/all_the_bacteria/all_atb_files.tsv.schema.json`	JSON Schema	`all_the_bacteria`	GitHub
`schemas/all_the_bacteria/assembly_index.tsv.schema.json`	JSON Schema	`all_the_bacteria`	GitHub
`schemas/all_the_bacteria/bakta_index.tsv.schema.json`	JSON Schema	`all_the_bacteria`	GitHub
`schemas/gene_association_file/gene_association_file.schema.json`	JSON Schema	`gene_association_file`	GitHub
`schemas/gff/gff.schema.json`	JSON Schema	`gff`	GitHub
`schemas/gtdb/gtdb_metadata.schema.json`	JSON Schema	`gtdb`	GitHub
`schemas/gtdb/gtdb_taxonomy.schema.json`	JSON Schema	`gtdb`	GitHub
`schemas/ncbi/ftp_mod_times.schema.json`	JSON Schema	`ncbi`	GitHub
`schemas/ncbi_datasets/annotationReport.schema.json`	JSON Schema	`ncbi_datasets`	GitHub
`schemas/ncbi_datasets/datasetReport.schema.json`	JSON Schema	`ncbi_datasets`	GitHub
`schemas/pubmed/pubmed.xsd`	XML Schema (XSD)	`pubmed`	GitHub
`schemas/uniprot/idmapping.schema.json`	JSON Schema	`uniprot`	GitHub
`schemas/uniprot/uniprot.xsd`	XML Schema (XSD)	`uniprot`	GitHub
`schemas/uniref/uniref.xsd`	XML Schema (XSD)	`uniref`	GitHub
`schemas/xsv_config/0.1.0/schema.json`	JSON Schema	`xsv_config`	GitHub · Site JSON